RNA–Protein interactions for RNA: ENST00000546710.2

LINC02404-201, Transcript of long intergenic non-protein coding RNA 2404, humanhuman

TSL 5 BASIC

Gene LINC02404, Length 1,188 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02404-201ENST00000546710 AEBP2Q6ZN18 517 aaPredicted RBP29.12■■■□□ 2.25
LINC02404-201ENST00000546710 CHIC1Q5VXU3 224 aa27.94■■■□□ 2.06
LINC02404-201ENST00000546710 SENP3Q9H4L4 574 aaPredicted RBP25.01■■□□□ 1.59
LINC02404-201ENST00000546710 PHF23Q9BUL5 403 aaPredicted RBP24.6■■□□□ 1.53
LINC02404-201ENST00000546710 FOXD1Q16676 465 aa23.27■■□□□ 1.32
LINC02404-201ENST00000546710 PLPPR3Q6T4P5 718 aa22.51■■□□□ 1.19
LINC02404-201ENST00000546710 MSH5O43196 834 aa22■■□□□ 1.11
LINC02404-201ENST00000546710 POTEDQ86YR6 584 aa21.96■■□□□ 1.11
LINC02404-201ENST00000546710 PPP6R1Q9UPN7 881 aa21.79■■□□□ 1.08
LINC02404-201ENST00000546710 ADRA2BP18089 450 aa21.76■■□□□ 1.07
LINC02404-201ENST00000546710 PIAS4Q8N2W9 510 aaPredicted RBP21.72■■□□□ 1.07
LINC02404-201ENST00000546710 MAPK8IP2Q13387 824 aaPredicted RBP19.85■□□□□ 0.77
LINC02404-201ENST00000546710 SCAF1Q9H7N4 1312 aaKnown RBP19.84■□□□□ 0.77
LINC02404-201ENST00000546710 PPP4R3CPQ6ZMV5 832 aa19.81■□□□□ 0.76
LINC02404-201ENST00000546710 DMRT2Q9Y5R5 561 aa19.74■□□□□ 0.75
LINC02404-201ENST00000546710 CNKSR2Q8WXI2 1034 aa19.32■□□□□ 0.68
LINC02404-201ENST00000546710 NCBP3Q53F19 620 aaKnown RBP19.16■□□□□ 0.66
LINC02404-201ENST00000546710 CACNB1Q02641 598 aaPredicted RBP19.08■□□□□ 0.64
LINC02404-201ENST00000546710 HOXD11P31277 338 aaPredicted RBP19.05■□□□□ 0.64
LINC02404-201ENST00000546710 RNF216Q9NWF9 866 aaPredicted RBP19.03■□□□□ 0.64
LINC02404-201ENST00000546710 DCAF8L1A6NGE4 600 aa19■□□□□ 0.63
LINC02404-201ENST00000546710 KCNA4P22459 653 aa18.97■□□□□ 0.63
LINC02404-201ENST00000546710 NPM3O75607 178 aaKnown RBP18.91■□□□□ 0.62
LINC02404-201ENST00000546710 RNF39Q9H2S5 420 aa18.68■□□□□ 0.58
LINC02404-201ENST00000546710 C1QBPQ07021 282 aaKnown RBP18.44■□□□□ 0.54
LINC02404-201ENST00000546710 DNAJC5BQ9UF47 199 aa18.36■□□□□ 0.53
LINC02404-201ENST00000546710 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.17■□□□□ 0.5
LINC02404-201ENST00000546710 SLC4A1APQ9BWU0 796 aaKnown RBP17.98■□□□□ 0.47
LINC02404-201ENST00000546710 SLC4A2P04920 1241 aa17.96■□□□□ 0.47
LINC02404-201ENST00000546710 U3KPZ7 1027 aaPredicted RBP17.84■□□□□ 0.45
LINC02404-201ENST00000546710 FOXD4L1Q9NU39 408 aa17.53■□□□□ 0.4
LINC02404-201ENST00000546710 MYCNP04198 464 aaPredicted RBP17.47■□□□□ 0.39
LINC02404-201ENST00000546710 SPINK5Q9NQ38 1064 aaPredicted RBP17.47■□□□□ 0.39
LINC02404-201ENST00000546710 ZBTB22O15209 634 aa17.46■□□□□ 0.39
LINC02404-201ENST00000546710 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.45■□□□□ 0.38
LINC02404-201ENST00000546710 CAPN15O75808 1086 aa17.45■□□□□ 0.38
LINC02404-201ENST00000546710 HNRNPUL2Q1KMD3 747 aaKnown RBP17.45■□□□□ 0.38
LINC02404-201ENST00000546710 DSG3P32926 999 aa17.38■□□□□ 0.37
LINC02404-201ENST00000546710 SAMD1Q6SPF0 538 aaPredicted RBP17.38■□□□□ 0.37
LINC02404-201ENST00000546710 APLP2Q06481 763 aa17.34■□□□□ 0.37
LINC02404-201ENST00000546710 TRHP20396 242 aaPredicted RBP17.23■□□□□ 0.35
LINC02404-201ENST00000546710 ZNF219Q9P2Y4 722 aaPredicted RBP17.19■□□□□ 0.34
LINC02404-201ENST00000546710 POTEHQ6S545 545 aa17.17■□□□□ 0.34
LINC02404-201ENST00000546710 EHMT2Q96KQ7 1210 aa17.09■□□□□ 0.33
LINC02404-201ENST00000546710 ATF5Q9Y2D1 282 aaPredicted RBP17.07■□□□□ 0.32
LINC02404-201ENST00000546710 ABCB7O75027 752 aa17.06■□□□□ 0.32
LINC02404-201ENST00000546710 CSRNP3Q8WYN3 585 aa17.04■□□□□ 0.32
LINC02404-201ENST00000546710 ATXN8OSP0DMR3 200 aa16.93■□□□□ 0.3
LINC02404-201ENST00000546710 POLA2Q14181 598 aa16.87■□□□□ 0.29
LINC02404-201ENST00000546710 RBM42Q9BTD8 480 aaKnown RBP16.69■□□□□ 0.26
LINC02404-201ENST00000546710 ZBTB12Q9Y330 459 aaPredicted RBP16.52■□□□□ 0.24
LINC02404-201ENST00000546710 CHRDL2Q6WN34 429 aa16.39■□□□□ 0.21
LINC02404-201ENST00000546710 FBLN2P98095 1184 aa16.33■□□□□ 0.2
LINC02404-201ENST00000546710 OSCARQ8IYS5 282 aa16.33■□□□□ 0.2
LINC02404-201ENST00000546710 MKRN4PQ13434 485 aaPredicted RBP16.3■□□□□ 0.2
LINC02404-201ENST00000546710 AKT1S1Q96B36 256 aa16.2■□□□□ 0.18
LINC02404-201ENST00000546710 SPDYE2BA6NHP3 402 aa16.07■□□□□ 0.16
LINC02404-201ENST00000546710 SPDYE6P0CI01 402 aa16.07■□□□□ 0.16
LINC02404-201ENST00000546710 SPDYE2Q495Y8 402 aa16.07■□□□□ 0.16
LINC02404-201ENST00000546710 REM2Q8IYK8 340 aaPredicted RBP16.01■□□□□ 0.15
LINC02404-201ENST00000546710 ZNF692Q9BU19 519 aaPredicted RBP15.96■□□□□ 0.15
LINC02404-201ENST00000546710 SP7Q8TDD2 431 aaPredicted RBP15.95■□□□□ 0.14
LINC02404-201ENST00000546710 SSUH2Q9Y2M2 353 aa15.91■□□□□ 0.14
LINC02404-201ENST00000546710 PIP4P2Q8N4L2 257 aa15.9■□□□□ 0.14
LINC02404-201ENST00000546710 PITPNM1O00562 1244 aa15.82■□□□□ 0.12
LINC02404-201ENST00000546710 HAX1O00165 279 aa15.76■□□□□ 0.11
LINC02404-201ENST00000546710 FXR2P51116 673 aaKnown RBP eCLIP15.76■□□□□ 0.11
LINC02404-201ENST00000546710 PABPN1Q86U42 306 aaKnown RBP eCLIP15.75■□□□□ 0.11
LINC02404-201ENST00000546710 SPDYE4A6NLX3 237 aa15.74■□□□□ 0.11
LINC02404-201ENST00000546710 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
LINC02404-201ENST00000546710 CLEC11AQ9Y240 323 aa15.66■□□□□ 0.1
LINC02404-201ENST00000546710 PRR29P0C7W0 189 aa15.45■□□□□ 0.06
LINC02404-201ENST00000546710 PRKAR2AP13861 404 aaKnown RBP15.44■□□□□ 0.06
LINC02404-201ENST00000546710 FKBP8Q14318 412 aa15.43■□□□□ 0.06
LINC02404-201ENST00000546710 EVX2Q03828 476 aa15.42■□□□□ 0.06
LINC02404-201ENST00000546710 PROM2Q8N271 834 aa15.42■□□□□ 0.06
LINC02404-201ENST00000546710 STAG3Q9UJ98 1225 aa15.38■□□□□ 0.05
LINC02404-201ENST00000546710 CHADLQ6NUI6 762 aa15.32■□□□□ 0.04
LINC02404-201ENST00000546710 C19orf67A6NJJ6 358 aa15.27■□□□□ 0.04
LINC02404-201ENST00000546710 CREBZFQ9NS37 354 aa15.18■□□□□ 0.02
LINC02404-201ENST00000546710 GABBR2O75899 941 aa15.14■□□□□ 0.01
LINC02404-201ENST00000546710 FARP1Q9Y4F1 1045 aaPredicted RBP15.12■□□□□ 0.01
LINC02404-201ENST00000546710 MNX1P50219 401 aaPredicted RBP14.98□□□□□ -0.01
LINC02404-201ENST00000546710 MIER1Q8N108 512 aa14.98□□□□□ -0.01
LINC02404-201ENST00000546710 LHX8Q68G74 356 aa14.96□□□□□ -0.01
LINC02404-201ENST00000546710 CD44P16070 742 aaKnown RBP14.94□□□□□ -0.02
LINC02404-201ENST00000546710 FBXO3Q9UK99 471 aa14.94□□□□□ -0.02
LINC02404-201ENST00000546710 PLCD3Q8N3E9 789 aa14.91□□□□□ -0.02
LINC02404-201ENST00000546710 PLEKHG5O94827 1062 aa14.89□□□□□ -0.03
LINC02404-201ENST00000546710 NPM1P06748 294 aaKnown RBP eCLIP14.89□□□□□ -0.03
LINC02404-201ENST00000546710 CLCN6P51797 869 aa14.89□□□□□ -0.03
LINC02404-201ENST00000546710 VASPP50552 380 aaPredicted RBP14.78□□□□□ -0.04
LINC02404-201ENST00000546710 ZRANB1Q9UGI0 708 aa14.78□□□□□ -0.04
LINC02404-201ENST00000546710 POTEIP0CG38 1075 aa14.75□□□□□ -0.05
LINC02404-201ENST00000546710 PAK3O75914 559 aaPredicted RBP14.73□□□□□ -0.05
LINC02404-201ENST00000546710 ZBTB47Q9UFB7 747 aaPredicted RBP14.73□□□□□ -0.05
LINC02404-201ENST00000546710 DCBLD2Q96PD2 775 aa14.72□□□□□ -0.05
LINC02404-201ENST00000546710 ZNF579Q8NAF0 562 aaKnown RBP14.7□□□□□ -0.06
LINC02404-201ENST00000546710 TSPYL2Q9H2G4 693 aaPredicted RBP14.68□□□□□ -0.06
LINC02404-201ENST00000546710 RASEFQ8IZ41 740 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms