Protein–RNA interactions for Protein: Q9Y5N1

HRH3, Histamine H3 receptor, humanhuman

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HRH3Q9Y5N1 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
HRH3Q9Y5N1 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
HRH3Q9Y5N1 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.28■■□□□ 1.16
HRH3Q9Y5N1 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
HRH3Q9Y5N1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.28■■□□□ 1.16
HRH3Q9Y5N1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HRH3Q9Y5N1 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HRH3Q9Y5N1 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HRH3Q9Y5N1 RP9P-202ENST00000450133 1212 ntBASIC22.28■■□□□ 1.16
HRH3Q9Y5N1 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HRH3Q9Y5N1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.27■■□□□ 1.16
HRH3Q9Y5N1 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.27■■□□□ 1.16
HRH3Q9Y5N1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.27■■□□□ 1.16
HRH3Q9Y5N1 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
HRH3Q9Y5N1 RAP2CP1-202ENST00000605179 643 ntBASIC22.27■■□□□ 1.16
HRH3Q9Y5N1 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HRH3Q9Y5N1 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HRH3Q9Y5N1 RARRES2P1-201ENST00000474487 481 ntBASIC22.26■■□□□ 1.15
HRH3Q9Y5N1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC22.26■■□□□ 1.15
HRH3Q9Y5N1 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HRH3Q9Y5N1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HRH3Q9Y5N1 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HRH3Q9Y5N1 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HRH3Q9Y5N1 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HRH3Q9Y5N1 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.25■■□□□ 1.15
HRH3Q9Y5N1 MIR3960-201ENST00000583311 91 ntBASIC22.25■■□□□ 1.15
HRH3Q9Y5N1 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HRH3Q9Y5N1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
HRH3Q9Y5N1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.24■■□□□ 1.15
HRH3Q9Y5N1 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HRH3Q9Y5N1 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HRH3Q9Y5N1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.23■■□□□ 1.15
HRH3Q9Y5N1 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
HRH3Q9Y5N1 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.23■■□□□ 1.15
HRH3Q9Y5N1 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.22■■□□□ 1.15
HRH3Q9Y5N1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HRH3Q9Y5N1 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HRH3Q9Y5N1 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
HRH3Q9Y5N1 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HRH3Q9Y5N1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HRH3Q9Y5N1 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC22.21■■□□□ 1.15
HRH3Q9Y5N1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.21■■□□□ 1.15
HRH3Q9Y5N1 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.21■■□□□ 1.15
HRH3Q9Y5N1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HRH3Q9Y5N1 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HRH3Q9Y5N1 SPCS2P3-201ENST00000500401 656 ntBASIC22.19■■□□□ 1.14
HRH3Q9Y5N1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HRH3Q9Y5N1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
HRH3Q9Y5N1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.18■■□□□ 1.14
HRH3Q9Y5N1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
HRH3Q9Y5N1 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.17■■□□□ 1.14
HRH3Q9Y5N1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HRH3Q9Y5N1 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
HRH3Q9Y5N1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HRH3Q9Y5N1 DUX4L9-201ENST00000449051 1259 ntBASIC22.17■■□□□ 1.14
HRH3Q9Y5N1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.17■■□□□ 1.14
HRH3Q9Y5N1 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HRH3Q9Y5N1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HRH3Q9Y5N1 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.16■■□□□ 1.14
HRH3Q9Y5N1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HRH3Q9Y5N1 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HRH3Q9Y5N1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HRH3Q9Y5N1 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HRH3Q9Y5N1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
HRH3Q9Y5N1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
HRH3Q9Y5N1 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HRH3Q9Y5N1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HRH3Q9Y5N1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
HRH3Q9Y5N1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.14■■□□□ 1.13
HRH3Q9Y5N1 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
HRH3Q9Y5N1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HRH3Q9Y5N1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
HRH3Q9Y5N1 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
HRH3Q9Y5N1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
HRH3Q9Y5N1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HRH3Q9Y5N1 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HRH3Q9Y5N1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HRH3Q9Y5N1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HRH3Q9Y5N1 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
HRH3Q9Y5N1 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
HRH3Q9Y5N1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms