Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
COL17A1Q9UMD9 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC37.6■■■■□ 3.61
COL17A1Q9UMD9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC37.6■■■■□ 3.61
COL17A1Q9UMD9 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
COL17A1Q9UMD9 AC135279.3-201ENST00000610945 1311 ntBASIC37.6■■■■□ 3.61
COL17A1Q9UMD9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC37.59■■■■□ 3.61
COL17A1Q9UMD9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC37.58■■■■□ 3.61
COL17A1Q9UMD9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC37.58■■■■□ 3.61
COL17A1Q9UMD9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC37.58■■■■□ 3.61
COL17A1Q9UMD9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
COL17A1Q9UMD9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
COL17A1Q9UMD9 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC37.57■■■■□ 3.6
COL17A1Q9UMD9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC37.56■■■■□ 3.6
COL17A1Q9UMD9 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC37.56■■■■□ 3.6
COL17A1Q9UMD9 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC37.56■■■■□ 3.6
COL17A1Q9UMD9 KRT18P24-201ENST00000344739 1156 ntBASIC37.56■■■■□ 3.6
COL17A1Q9UMD9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC37.56■■■■□ 3.6
COL17A1Q9UMD9 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
COL17A1Q9UMD9 AC092028.1-203ENST00000608262 953 ntBASIC37.55■■■■□ 3.6
COL17A1Q9UMD9 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
COL17A1Q9UMD9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC37.55■■■■□ 3.6
COL17A1Q9UMD9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC37.54■■■■□ 3.6
COL17A1Q9UMD9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC37.54■■■■□ 3.6
COL17A1Q9UMD9 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
COL17A1Q9UMD9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC37.53■■■■□ 3.6
COL17A1Q9UMD9 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
COL17A1Q9UMD9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
COL17A1Q9UMD9 AP004833.2-201ENST00000532228 1454 ntBASIC37.52■■■■□ 3.6
COL17A1Q9UMD9 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC37.51■■■■□ 3.6
COL17A1Q9UMD9 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC37.51■■■■□ 3.59
COL17A1Q9UMD9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC37.51■■■■□ 3.59
COL17A1Q9UMD9 AL512631.2-201ENST00000604634 923 ntBASIC37.51■■■■□ 3.59
COL17A1Q9UMD9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
COL17A1Q9UMD9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC37.5■■■■□ 3.59
COL17A1Q9UMD9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC37.5■■■■□ 3.59
COL17A1Q9UMD9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
COL17A1Q9UMD9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
COL17A1Q9UMD9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC37.49■■■■□ 3.59
COL17A1Q9UMD9 AC022616.5-201ENST00000518796 181 ntBASIC37.49■■■■□ 3.59
COL17A1Q9UMD9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC37.49■■■■□ 3.59
COL17A1Q9UMD9 MIR5787-201ENST00000611784 55 ntBASIC37.49■■■■□ 3.59
COL17A1Q9UMD9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC37.49■■■■□ 3.59
COL17A1Q9UMD9 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC37.49■■■■□ 3.59
COL17A1Q9UMD9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC37.48■■■■□ 3.59
COL17A1Q9UMD9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC37.47■■■■□ 3.59
COL17A1Q9UMD9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC37.46■■■■□ 3.59
COL17A1Q9UMD9 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
COL17A1Q9UMD9 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC37.45■■■■□ 3.59
COL17A1Q9UMD9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC37.45■■■■□ 3.59
COL17A1Q9UMD9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC37.45■■■■□ 3.59
COL17A1Q9UMD9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC37.45■■■■□ 3.59
COL17A1Q9UMD9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC37.44■■■■□ 3.58
COL17A1Q9UMD9 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC37.44■■■■□ 3.58
COL17A1Q9UMD9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC37.44■■■■□ 3.58
COL17A1Q9UMD9 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC37.44■■■■□ 3.58
COL17A1Q9UMD9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC37.44■■■■□ 3.58
COL17A1Q9UMD9 AL031432.3-201ENST00000607698 485 ntBASIC37.44■■■■□ 3.58
COL17A1Q9UMD9 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC37.43■■■■□ 3.58
COL17A1Q9UMD9 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC37.43■■■■□ 3.58
COL17A1Q9UMD9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC37.43■■■■□ 3.58
COL17A1Q9UMD9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.58
COL17A1Q9UMD9 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC37.42■■■■□ 3.58
COL17A1Q9UMD9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC37.42■■■■□ 3.58
COL17A1Q9UMD9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC37.42■■■■□ 3.58
COL17A1Q9UMD9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC37.41■■■■□ 3.58
COL17A1Q9UMD9 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC37.41■■■■□ 3.58
COL17A1Q9UMD9 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC37.41■■■■□ 3.58
COL17A1Q9UMD9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC37.41■■■■□ 3.58
COL17A1Q9UMD9 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC37.41■■■■□ 3.58
COL17A1Q9UMD9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
COL17A1Q9UMD9 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
COL17A1Q9UMD9 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC37.39■■■■□ 3.58
COL17A1Q9UMD9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
COL17A1Q9UMD9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC37.39■■■■□ 3.58
COL17A1Q9UMD9 WHAMMP3-201ENST00000611636 1609 ntBASIC37.38■■■■□ 3.58
COL17A1Q9UMD9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC37.38■■■■□ 3.57
COL17A1Q9UMD9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC37.37■■■■□ 3.57
COL17A1Q9UMD9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC37.37■■■■□ 3.57
COL17A1Q9UMD9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC37.37■■■■□ 3.57
COL17A1Q9UMD9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC37.37■■■■□ 3.57
COL17A1Q9UMD9 AC106739.1-201ENST00000617035 715 ntBASIC37.37■■■■□ 3.57
COL17A1Q9UMD9 RASSF1-AS1-201ENST00000629828 790 ntBASIC37.37■■■■□ 3.57
COL17A1Q9UMD9 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC37.37■■■■□ 3.57
COL17A1Q9UMD9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC37.36■■■■□ 3.57
COL17A1Q9UMD9 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC37.36■■■■□ 3.57
COL17A1Q9UMD9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC37.36■■■■□ 3.57
COL17A1Q9UMD9 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC37.36■■■■□ 3.57
COL17A1Q9UMD9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC37.36■■■■□ 3.57
COL17A1Q9UMD9 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC37.36■■■■□ 3.57
COL17A1Q9UMD9 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 AC120024.1-201ENST00000562672 995 ntBASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 MIR6724-1-201ENST00000616420 92 ntBASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 MIR6724-2-201ENST00000616483 92 ntBASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 MIR6724-4-201ENST00000617390 92 ntBASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 MIR6724-3-201ENST00000622482 92 ntBASIC37.35■■■■□ 3.57
COL17A1Q9UMD9 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC37.35■■■■□ 3.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms