Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP1AQ9HD42 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 LINC01971-201ENST00000617888 1048 ntBASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP1AQ9HD42 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP1AQ9HD42 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP1AQ9HD42 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP1AQ9HD42 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP1AQ9HD42 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP1AQ9HD42 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CHMP1AQ9HD42 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP1AQ9HD42 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.52■□□□□ 0.88
CHMP1AQ9HD42 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP1AQ9HD42 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP1AQ9HD42 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP1AQ9HD42 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.52■□□□□ 0.87
CHMP1AQ9HD42 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP1AQ9HD42 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP1AQ9HD42 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP1AQ9HD42 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP1AQ9HD42 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP1AQ9HD42 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP1AQ9HD42 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.5■□□□□ 0.87
CHMP1AQ9HD42 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.5■□□□□ 0.87
CHMP1AQ9HD42 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.49■□□□□ 0.87
CHMP1AQ9HD42 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP1AQ9HD42 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CHMP1AQ9HD42 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CHMP1AQ9HD42 RPS2P35-201ENST00000443417 897 ntBASIC20.49■□□□□ 0.87
CHMP1AQ9HD42 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L13-201ENST00000554103 1267 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L15-201ENST00000611059 1267 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L23-201ENST00000615195 1269 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L24-201ENST00000617576 1269 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L22-201ENST00000618238 1269 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L20-201ENST00000619712 1269 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L21-201ENST00000622058 1269 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L10-201ENST00000622460 1267 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 DUX4L25-201ENST00000624915 1269 ntBASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CHMP1AQ9HD42 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 AC008813.1-201ENST00000536597 885 ntBASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CHMP1AQ9HD42 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
CHMP1AQ9HD42 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP1AQ9HD42 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.46■□□□□ 0.87
CHMP1AQ9HD42 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP1AQ9HD42 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP1AQ9HD42 ERN1-208ENST00000606895 2068 ntBASIC20.46■□□□□ 0.87
CHMP1AQ9HD42 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.87
CHMP1AQ9HD42 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP1AQ9HD42 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CHMP1AQ9HD42 AC010501.1-201ENST00000606270 1962 ntBASIC20.45■□□□□ 0.86
CHMP1AQ9HD42 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP1AQ9HD42 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP1AQ9HD42 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP1AQ9HD42 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP1AQ9HD42 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms