Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTX4Q96A99 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
PTX4Q96A99 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTX4Q96A99 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.62■□□□□ 0.89
PTX4Q96A99 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.61■□□□□ 0.89
PTX4Q96A99 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTX4Q96A99 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTX4Q96A99 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTX4Q96A99 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.61■□□□□ 0.89
PTX4Q96A99 AP003733.4-201ENST00000623785 1697 ntBASIC20.61■□□□□ 0.89
PTX4Q96A99 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.6■□□□□ 0.89
PTX4Q96A99 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTX4Q96A99 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
PTX4Q96A99 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.6■□□□□ 0.89
PTX4Q96A99 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTX4Q96A99 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTX4Q96A99 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTX4Q96A99 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.6■□□□□ 0.89
PTX4Q96A99 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTX4Q96A99 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.6■□□□□ 0.89
PTX4Q96A99 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTX4Q96A99 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTX4Q96A99 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTX4Q96A99 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTX4Q96A99 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.59■□□□□ 0.89
PTX4Q96A99 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.59■□□□□ 0.89
PTX4Q96A99 AC021231.2-201ENST00000594613 730 ntBASIC20.59■□□□□ 0.89
PTX4Q96A99 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTX4Q96A99 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTX4Q96A99 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.58■□□□□ 0.89
PTX4Q96A99 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTX4Q96A99 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PTX4Q96A99 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTX4Q96A99 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTX4Q96A99 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTX4Q96A99 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTX4Q96A99 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTX4Q96A99 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTX4Q96A99 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.56■□□□□ 0.88
PTX4Q96A99 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTX4Q96A99 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTX4Q96A99 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTX4Q96A99 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.56■□□□□ 0.88
PTX4Q96A99 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTX4Q96A99 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
PTX4Q96A99 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.56■□□□□ 0.88
PTX4Q96A99 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTX4Q96A99 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTX4Q96A99 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTX4Q96A99 DUX4L29-201ENST00000425409 679 ntBASIC20.55■□□□□ 0.88
PTX4Q96A99 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTX4Q96A99 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTX4Q96A99 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTX4Q96A99 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTX4Q96A99 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PTX4Q96A99 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTX4Q96A99 AC008813.1-201ENST00000536597 885 ntBASIC20.54■□□□□ 0.88
PTX4Q96A99 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.54■□□□□ 0.88
PTX4Q96A99 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTX4Q96A99 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.54■□□□□ 0.88
PTX4Q96A99 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PTX4Q96A99 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PTX4Q96A99 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTX4Q96A99 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.53■□□□□ 0.88
PTX4Q96A99 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PTX4Q96A99 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTX4Q96A99 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTX4Q96A99 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.52■□□□□ 0.88
PTX4Q96A99 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTX4Q96A99 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.52■□□□□ 0.88
PTX4Q96A99 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTX4Q96A99 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
PTX4Q96A99 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PTX4Q96A99 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTX4Q96A99 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.51■□□□□ 0.87
PTX4Q96A99 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTX4Q96A99 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
PTX4Q96A99 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTX4Q96A99 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PTX4Q96A99 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTX4Q96A99 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
PTX4Q96A99 AC148477.6-201ENST00000623746 465 ntBASIC20.51■□□□□ 0.87
PTX4Q96A99 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTX4Q96A99 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTX4Q96A99 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTX4Q96A99 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTX4Q96A99 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTX4Q96A99 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.5■□□□□ 0.87
PTX4Q96A99 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTX4Q96A99 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.5■□□□□ 0.87
PTX4Q96A99 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.5■□□□□ 0.87
PTX4Q96A99 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTX4Q96A99 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTX4Q96A99 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTX4Q96A99 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTX4Q96A99 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.49■□□□□ 0.87
PTX4Q96A99 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTX4Q96A99 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTX4Q96A99 LINC01124-201ENST00000409786 2117 ntBASIC20.49■□□□□ 0.87
PTX4Q96A99 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms