Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC24.19■■□□□ 1.46
LRRK1Q38SD2 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
LRRK1Q38SD2 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.19■■□□□ 1.46
LRRK1Q38SD2 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.19■■□□□ 1.46
LRRK1Q38SD2 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
LRRK1Q38SD2 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
LRRK1Q38SD2 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRK1Q38SD2 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRK1Q38SD2 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRK1Q38SD2 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRK1Q38SD2 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC24.18■■□□□ 1.46
LRRK1Q38SD2 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRRK1Q38SD2 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
LRRK1Q38SD2 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRRK1Q38SD2 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.17■■□□□ 1.46
LRRK1Q38SD2 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.17■■□□□ 1.46
LRRK1Q38SD2 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.17■■□□□ 1.46
LRRK1Q38SD2 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC24.17■■□□□ 1.46
LRRK1Q38SD2 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.17■■□□□ 1.46
LRRK1Q38SD2 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.16■■□□□ 1.46
LRRK1Q38SD2 PVT1_1.1-201ENST00000615125 194 ntBASIC24.16■■□□□ 1.46
LRRK1Q38SD2 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRK1Q38SD2 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRK1Q38SD2 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRRK1Q38SD2 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRK1Q38SD2 DUX4L18-201ENST00000553347 1267 ntBASIC24.15■■□□□ 1.46
LRRK1Q38SD2 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.15■■□□□ 1.46
LRRK1Q38SD2 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRK1Q38SD2 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
LRRK1Q38SD2 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRRK1Q38SD2 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.15■■□□□ 1.46
LRRK1Q38SD2 AL121749.1-202ENST00000609313 2153 ntBASIC24.15■■□□□ 1.46
LRRK1Q38SD2 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
LRRK1Q38SD2 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
LRRK1Q38SD2 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
LRRK1Q38SD2 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC24.14■■□□□ 1.45
LRRK1Q38SD2 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRRK1Q38SD2 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.12■■□□□ 1.45
LRRK1Q38SD2 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC24.12■■□□□ 1.45
LRRK1Q38SD2 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
LRRK1Q38SD2 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
LRRK1Q38SD2 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRRK1Q38SD2 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
LRRK1Q38SD2 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
LRRK1Q38SD2 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRRK1Q38SD2 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.11■■□□□ 1.45
LRRK1Q38SD2 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.1■■□□□ 1.45
LRRK1Q38SD2 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LRRK1Q38SD2 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.1■■□□□ 1.45
LRRK1Q38SD2 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.1■■□□□ 1.45
LRRK1Q38SD2 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
LRRK1Q38SD2 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
LRRK1Q38SD2 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 AC139795.1-202ENST00000500444 432 ntBASIC24.09■■□□□ 1.45
LRRK1Q38SD2 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRRK1Q38SD2 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.08■■□□□ 1.45
LRRK1Q38SD2 RARRES2P1-201ENST00000474487 481 ntBASIC24.08■■□□□ 1.45
LRRK1Q38SD2 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.08■■□□□ 1.45
LRRK1Q38SD2 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
LRRK1Q38SD2 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.07■■□□□ 1.44
LRRK1Q38SD2 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
LRRK1Q38SD2 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
LRRK1Q38SD2 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
LRRK1Q38SD2 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
LRRK1Q38SD2 MIR4508-201ENST00000584178 70 ntBASIC24.05■■□□□ 1.44
LRRK1Q38SD2 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
LRRK1Q38SD2 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
LRRK1Q38SD2 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
LRRK1Q38SD2 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC24.04■■□□□ 1.44
LRRK1Q38SD2 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.04■■□□□ 1.44
LRRK1Q38SD2 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
LRRK1Q38SD2 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
LRRK1Q38SD2 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
LRRK1Q38SD2 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
LRRK1Q38SD2 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.03■■□□□ 1.44
LRRK1Q38SD2 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
LRRK1Q38SD2 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
LRRK1Q38SD2 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC24.03■■□□□ 1.44
LRRK1Q38SD2 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.03■■□□□ 1.44
LRRK1Q38SD2 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
LRRK1Q38SD2 AC103724.3-201ENST00000564481 992 ntBASIC24.03■■□□□ 1.44
LRRK1Q38SD2 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
LRRK1Q38SD2 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC24.02■■□□□ 1.44
LRRK1Q38SD2 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms