Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC18.06■□□□□ 0.48
PRKDCP78527 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC18.06■□□□□ 0.48
PRKDCP78527 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PRKDCP78527 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.05■□□□□ 0.48
PRKDCP78527 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.05■□□□□ 0.48
PRKDCP78527 AC106739.1-201ENST00000617035 715 ntBASIC18.05■□□□□ 0.48
PRKDCP78527 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.05■□□□□ 0.48
PRKDCP78527 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PRKDCP78527 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PRKDCP78527 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.05■□□□□ 0.48
PRKDCP78527 RPS2P7-201ENST00000447334 885 ntBASIC18.05■□□□□ 0.48
PRKDCP78527 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PRKDCP78527 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PRKDCP78527 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKDCP78527 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PRKDCP78527 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PRKDCP78527 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PRKDCP78527 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.04■□□□□ 0.48
PRKDCP78527 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.04■□□□□ 0.48
PRKDCP78527 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.03■□□□□ 0.48
PRKDCP78527 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.03■□□□□ 0.48
PRKDCP78527 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
PRKDCP78527 AC100797.4-201ENST00000631653 1827 ntBASIC18.02■□□□□ 0.48
PRKDCP78527 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.02■□□□□ 0.48
PRKDCP78527 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.01■□□□□ 0.47
PRKDCP78527 AC142381.2-201ENST00000566120 298 ntBASIC18.01■□□□□ 0.47
PRKDCP78527 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PRKDCP78527 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PRKDCP78527 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18■□□□□ 0.47
PRKDCP78527 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
PRKDCP78527 AC097381.1-201ENST00000429019 1296 ntBASIC18■□□□□ 0.47
PRKDCP78527 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18■□□□□ 0.47
PRKDCP78527 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18■□□□□ 0.47
PRKDCP78527 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18■□□□□ 0.47
PRKDCP78527 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PRKDCP78527 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PRKDCP78527 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18■□□□□ 0.47
PRKDCP78527 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PRKDCP78527 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PRKDCP78527 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PRKDCP78527 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC17.99■□□□□ 0.47
PRKDCP78527 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PRKDCP78527 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PRKDCP78527 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
PRKDCP78527 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.99■□□□□ 0.47
PRKDCP78527 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PRKDCP78527 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.98■□□□□ 0.47
PRKDCP78527 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.98■□□□□ 0.47
PRKDCP78527 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PRKDCP78527 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PRKDCP78527 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.98■□□□□ 0.47
PRKDCP78527 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.97■□□□□ 0.47
PRKDCP78527 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
PRKDCP78527 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC17.97■□□□□ 0.47
PRKDCP78527 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC17.97■□□□□ 0.47
PRKDCP78527 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PRKDCP78527 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC17.97■□□□□ 0.47
PRKDCP78527 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PRKDCP78527 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PRKDCP78527 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC17.96■□□□□ 0.46
PRKDCP78527 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
PRKDCP78527 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PRKDCP78527 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC17.95■□□□□ 0.46
PRKDCP78527 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PRKDCP78527 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PRKDCP78527 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PRKDCP78527 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC17.95■□□□□ 0.46
PRKDCP78527 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.95■□□□□ 0.46
PRKDCP78527 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.95■□□□□ 0.46
PRKDCP78527 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PRKDCP78527 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.94■□□□□ 0.46
PRKDCP78527 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
PRKDCP78527 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
PRKDCP78527 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PRKDCP78527 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PRKDCP78527 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC17.93■□□□□ 0.46
PRKDCP78527 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PRKDCP78527 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PRKDCP78527 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PRKDCP78527 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PRKDCP78527 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC17.93■□□□□ 0.46
PRKDCP78527 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PRKDCP78527 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.93■□□□□ 0.46
PRKDCP78527 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PRKDCP78527 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.92■□□□□ 0.46
PRKDCP78527 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC17.92■□□□□ 0.46
PRKDCP78527 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.91■□□□□ 0.46
PRKDCP78527 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.91■□□□□ 0.46
PRKDCP78527 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PRKDCP78527 AL355001.2-201ENST00000620617 1191 ntBASIC17.91■□□□□ 0.46
PRKDCP78527 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PRKDCP78527 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC17.91■□□□□ 0.46
PRKDCP78527 KRT18P24-201ENST00000344739 1156 ntBASIC17.91■□□□□ 0.46
PRKDCP78527 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.91■□□□□ 0.46
PRKDCP78527 ESRRAP2-201ENST00000418437 1549 ntBASIC17.91■□□□□ 0.46
PRKDCP78527 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PRKDCP78527 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PRKDCP78527 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC17.91■□□□□ 0.46
PRKDCP78527 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PRKDCP78527 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms