Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.97■■■□□ 2.55
RFC4P35249 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
RFC4P35249 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.96■■■□□ 2.55
RFC4P35249 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC30.96■■■□□ 2.55
RFC4P35249 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
RFC4P35249 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
RFC4P35249 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.95■■■□□ 2.55
RFC4P35249 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.95■■■□□ 2.55
RFC4P35249 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.54
RFC4P35249 KRT16P3-201ENST00000439127 1283 ntBASIC30.94■■■□□ 2.54
RFC4P35249 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.94■■■□□ 2.54
RFC4P35249 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.94■■■□□ 2.54
RFC4P35249 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
RFC4P35249 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
RFC4P35249 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.93■■■□□ 2.54
RFC4P35249 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.93■■■□□ 2.54
RFC4P35249 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.93■■■□□ 2.54
RFC4P35249 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC30.93■■■□□ 2.54
RFC4P35249 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.92■■■□□ 2.54
RFC4P35249 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
RFC4P35249 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
RFC4P35249 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.92■■■□□ 2.54
RFC4P35249 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
RFC4P35249 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
RFC4P35249 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.91■■■□□ 2.54
RFC4P35249 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.9■■■□□ 2.54
RFC4P35249 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
RFC4P35249 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.89■■■□□ 2.54
RFC4P35249 KRT18P24-201ENST00000344739 1156 ntBASIC30.89■■■□□ 2.54
RFC4P35249 KRT18P10-201ENST00000388836 1287 ntBASIC30.89■■■□□ 2.54
RFC4P35249 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
RFC4P35249 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.89■■■□□ 2.54
RFC4P35249 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.89■■■□□ 2.54
RFC4P35249 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.53
RFC4P35249 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.53
RFC4P35249 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
RFC4P35249 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
RFC4P35249 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
RFC4P35249 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.87■■■□□ 2.53
RFC4P35249 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC30.87■■■□□ 2.53
RFC4P35249 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
RFC4P35249 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC30.86■■■□□ 2.53
RFC4P35249 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
RFC4P35249 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
RFC4P35249 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
RFC4P35249 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
RFC4P35249 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
RFC4P35249 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
RFC4P35249 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
RFC4P35249 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
RFC4P35249 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC30.85■■■□□ 2.53
RFC4P35249 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.85■■■□□ 2.53
RFC4P35249 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
RFC4P35249 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
RFC4P35249 MIR638-201ENST00000385237 100 ntBASIC30.84■■■□□ 2.53
RFC4P35249 TSPY9P-201ENST00000440215 945 ntBASIC30.83■■■□□ 2.53
RFC4P35249 TSPY11P-201ENST00000442607 1045 ntBASIC30.83■■■□□ 2.53
RFC4P35249 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.82■■■□□ 2.52
RFC4P35249 AC137630.3-201ENST00000607245 391 ntBASIC30.82■■■□□ 2.52
RFC4P35249 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.82■■■□□ 2.52
RFC4P35249 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.82■■■□□ 2.52
RFC4P35249 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.81■■■□□ 2.52
RFC4P35249 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.81■■■□□ 2.52
RFC4P35249 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.81■■■□□ 2.52
RFC4P35249 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
RFC4P35249 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.81■■■□□ 2.52
RFC4P35249 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
RFC4P35249 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.8■■■□□ 2.52
RFC4P35249 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.8■■■□□ 2.52
RFC4P35249 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.8■■■□□ 2.52
RFC4P35249 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
RFC4P35249 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
RFC4P35249 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
RFC4P35249 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.79■■■□□ 2.52
RFC4P35249 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.78■■■□□ 2.52
RFC4P35249 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.78■■■□□ 2.52
RFC4P35249 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.78■■■□□ 2.52
RFC4P35249 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
RFC4P35249 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
RFC4P35249 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
RFC4P35249 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
RFC4P35249 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.77■■■□□ 2.52
RFC4P35249 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
RFC4P35249 AC021242.3-201ENST00000607598 1377 ntBASIC30.77■■■□□ 2.52
RFC4P35249 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.76■■■□□ 2.51
RFC4P35249 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
RFC4P35249 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.76■■■□□ 2.51
RFC4P35249 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
RFC4P35249 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.75■■■□□ 2.51
RFC4P35249 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
RFC4P35249 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
RFC4P35249 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.74■■■□□ 2.51
RFC4P35249 AC120024.1-201ENST00000562672 995 ntBASIC30.74■■■□□ 2.51
RFC4P35249 AL139246.5-201ENST00000606645 996 ntBASIC30.74■■■□□ 2.51
RFC4P35249 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
RFC4P35249 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
RFC4P35249 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.73■■■□□ 2.51
RFC4P35249 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.73■■■□□ 2.51
RFC4P35249 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC30.73■■■□□ 2.51
RFC4P35249 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms