Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC18.35■□□□□ 0.53
HLA-DMBP28068 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DMBP28068 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DMBP28068 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
HLA-DMBP28068 AL359504.2-201ENST00000605506 1601 ntBASIC18.34■□□□□ 0.53
HLA-DMBP28068 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC18.33■□□□□ 0.53
HLA-DMBP28068 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.33■□□□□ 0.53
HLA-DMBP28068 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HLA-DMBP28068 MED25-210ENST00000612854 801 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DMBP28068 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DMBP28068 MED25-214ENST00000622402 642 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DMBP28068 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DMBP28068 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DMBP28068 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DMBP28068 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DMBP28068 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DMBP28068 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HLA-DMBP28068 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DMBP28068 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
HLA-DMBP28068 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HLA-DMBP28068 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DMBP28068 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HLA-DMBP28068 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DMBP28068 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DMBP28068 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DMBP28068 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DMBP28068 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DMBP28068 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HLA-DMBP28068 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DMBP28068 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
HLA-DMBP28068 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DMBP28068 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HLA-DMBP28068 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DMBP28068 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC18.31■□□□□ 0.52
HLA-DMBP28068 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HLA-DMBP28068 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
HLA-DMBP28068 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DMBP28068 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HLA-DMBP28068 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC18.3■□□□□ 0.52
HLA-DMBP28068 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.3■□□□□ 0.52
HLA-DMBP28068 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DMBP28068 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
HLA-DMBP28068 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HLA-DMBP28068 AC096887.2-201ENST00000623443 1957 ntBASIC18.3■□□□□ 0.52
HLA-DMBP28068 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HLA-DMBP28068 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HLA-DMBP28068 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.29■□□□□ 0.52
HLA-DMBP28068 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DMBP28068 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DMBP28068 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HLA-DMBP28068 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DMBP28068 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DMBP28068 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HLA-DMBP28068 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.28■□□□□ 0.52
HLA-DMBP28068 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DMBP28068 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DMBP28068 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DMBP28068 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC18.27■□□□□ 0.52
HLA-DMBP28068 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HLA-DMBP28068 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DMBP28068 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DMBP28068 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
HLA-DMBP28068 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HLA-DMBP28068 SNAI3-AS1-204ENST00000567997 2048 ntBASIC18.26■□□□□ 0.51
HLA-DMBP28068 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DMBP28068 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HLA-DMBP28068 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HLA-DMBP28068 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HLA-DMBP28068 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DMBP28068 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC18.25■□□□□ 0.51
HLA-DMBP28068 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DMBP28068 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DMBP28068 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC18.24■□□□□ 0.51
HLA-DMBP28068 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
HLA-DMBP28068 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
HLA-DMBP28068 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DMBP28068 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DMBP28068 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DMBP28068 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DMBP28068 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DMBP28068 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DMBP28068 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HLA-DMBP28068 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DMBP28068 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DMBP28068 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DMBP28068 AC093323.1-202ENST00000635031 2045 ntBASIC18.22■□□□□ 0.51
HLA-DMBP28068 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.22■□□□□ 0.51
HLA-DMBP28068 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DMBP28068 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HLA-DMBP28068 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DMBP28068 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.22■□□□□ 0.51
HLA-DMBP28068 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC18.22■□□□□ 0.51
HLA-DMBP28068 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DMBP28068 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DMBP28068 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DMBP28068 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
HLA-DMBP28068 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DMBP28068 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC18.21■□□□□ 0.51
HLA-DMBP28068 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms