Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CCL1P22362 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCL1P22362 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCL1P22362 AC142381.3-201ENST00000568208 1670 ntBASIC20.9■□□□□ 0.94
CCL1P22362 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCL1P22362 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCL1P22362 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.9■□□□□ 0.94
CCL1P22362 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
CCL1P22362 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCL1P22362 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCL1P22362 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCL1P22362 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCL1P22362 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCL1P22362 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CCL1P22362 AC016575.1-201ENST00000607026 382 ntBASIC20.89■□□□□ 0.93
CCL1P22362 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
CCL1P22362 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CCL1P22362 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCL1P22362 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.88■□□□□ 0.93
CCL1P22362 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCL1P22362 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.88■□□□□ 0.93
CCL1P22362 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCL1P22362 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CCL1P22362 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCL1P22362 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.87■□□□□ 0.93
CCL1P22362 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCL1P22362 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCL1P22362 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCL1P22362 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CCL1P22362 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCL1P22362 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCL1P22362 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCL1P22362 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCL1P22362 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.86■□□□□ 0.93
CCL1P22362 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.85■□□□□ 0.93
CCL1P22362 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.85■□□□□ 0.93
CCL1P22362 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.85■□□□□ 0.93
CCL1P22362 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCL1P22362 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL1P22362 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL1P22362 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCL1P22362 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL1P22362 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL1P22362 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.84■□□□□ 0.93
CCL1P22362 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL1P22362 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL1P22362 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCL1P22362 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL1P22362 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCL1P22362 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL1P22362 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL1P22362 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.83■□□□□ 0.93
CCL1P22362 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCL1P22362 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CCL1P22362 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.83■□□□□ 0.92
CCL1P22362 AC022211.4-201ENST00000625094 2161 ntBASIC20.83■□□□□ 0.92
CCL1P22362 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
CCL1P22362 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCL1P22362 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCL1P22362 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.82■□□□□ 0.92
CCL1P22362 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCL1P22362 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCL1P22362 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCL1P22362 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCL1P22362 AL157400.5-201ENST00000507624 621 ntBASIC20.81■□□□□ 0.92
CCL1P22362 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCL1P22362 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.81■□□□□ 0.92
CCL1P22362 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.81■□□□□ 0.92
CCL1P22362 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCL1P22362 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCL1P22362 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.8■□□□□ 0.92
CCL1P22362 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCL1P22362 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.8■□□□□ 0.92
CCL1P22362 AC093323.1-202ENST00000635031 2045 ntBASIC20.8■□□□□ 0.92
CCL1P22362 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCL1P22362 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCL1P22362 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCL1P22362 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCL1P22362 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCL1P22362 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCL1P22362 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCL1P22362 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.78■□□□□ 0.92
CCL1P22362 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCL1P22362 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCL1P22362 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.78■□□□□ 0.92
CCL1P22362 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCL1P22362 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.78■□□□□ 0.92
CCL1P22362 AC025884.2-201ENST00000553429 711 ntBASIC20.78■□□□□ 0.92
CCL1P22362 AC138932.3-201ENST00000567634 1902 ntBASIC20.78■□□□□ 0.92
CCL1P22362 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
CCL1P22362 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.77■□□□□ 0.92
CCL1P22362 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms