Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
MMP28Q9H239 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MMP28Q9H239 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MMP28Q9H239 AC044849.2-201ENST00000606596 710 ntBASIC21.26■□□□□ 0.99
MMP28Q9H239 CLDN5-201ENST00000403084 2357 ntBASIC21.26■□□□□ 0.99
MMP28Q9H239 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.26■□□□□ 0.99
MMP28Q9H239 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MMP28Q9H239 AL139125.2-201ENST00000623134 1869 ntBASIC21.26■□□□□ 0.99
MMP28Q9H239 AC068473.5-201ENST00000616428 2072 ntBASIC21.25■□□□□ 0.99
MMP28Q9H239 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MMP28Q9H239 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MMP28Q9H239 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MMP28Q9H239 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.25■□□□□ 0.99
MMP28Q9H239 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.25■□□□□ 0.99
MMP28Q9H239 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MMP28Q9H239 AC142381.3-201ENST00000568208 1670 ntBASIC21.24■□□□□ 0.99
MMP28Q9H239 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MMP28Q9H239 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MMP28Q9H239 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.24■□□□□ 0.99
MMP28Q9H239 AC079834.2-201ENST00000609776 1949 ntBASIC21.24■□□□□ 0.99
MMP28Q9H239 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MMP28Q9H239 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
MMP28Q9H239 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MMP28Q9H239 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.24■□□□□ 0.99
MMP28Q9H239 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MMP28Q9H239 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MMP28Q9H239 LINC00543-201ENST00000567234 1845 ntBASIC21.23■□□□□ 0.99
MMP28Q9H239 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MMP28Q9H239 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MMP28Q9H239 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
MMP28Q9H239 AC127502.1-201ENST00000399971 1502 ntBASIC21.23■□□□□ 0.99
MMP28Q9H239 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MMP28Q9H239 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MMP28Q9H239 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MMP28Q9H239 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MMP28Q9H239 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MMP28Q9H239 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
MMP28Q9H239 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MMP28Q9H239 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
MMP28Q9H239 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
MMP28Q9H239 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MMP28Q9H239 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
MMP28Q9H239 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP28Q9H239 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
MMP28Q9H239 MIR6090-201ENST00000622481 60 ntBASIC21.2■□□□□ 0.98
MMP28Q9H239 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.2■□□□□ 0.98
MMP28Q9H239 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP28Q9H239 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP28Q9H239 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MMP28Q9H239 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
MMP28Q9H239 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
MMP28Q9H239 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
MMP28Q9H239 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
MMP28Q9H239 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP28Q9H239 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP28Q9H239 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP28Q9H239 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MMP28Q9H239 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.18■□□□□ 0.98
MMP28Q9H239 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MMP28Q9H239 ABHD17AP4-201ENST00000411545 909 ntBASIC21.18■□□□□ 0.98
MMP28Q9H239 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
MMP28Q9H239 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MMP28Q9H239 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MMP28Q9H239 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MMP28Q9H239 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MMP28Q9H239 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MMP28Q9H239 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
MMP28Q9H239 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MMP28Q9H239 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MMP28Q9H239 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MMP28Q9H239 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MMP28Q9H239 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MMP28Q9H239 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
MMP28Q9H239 AC138932.3-201ENST00000567634 1902 ntBASIC21.16■□□□□ 0.98
MMP28Q9H239 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MMP28Q9H239 AC018358.1-201ENST00000631079 1402 ntBASIC21.15■□□□□ 0.98
MMP28Q9H239 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MMP28Q9H239 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
MMP28Q9H239 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
MMP28Q9H239 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MMP28Q9H239 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MMP28Q9H239 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MMP28Q9H239 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.15■□□□□ 0.98
MMP28Q9H239 MIR7108-201ENST00000614319 87 ntBASIC21.15■□□□□ 0.98
MMP28Q9H239 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.15■□□□□ 0.98
MMP28Q9H239 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MMP28Q9H239 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MMP28Q9H239 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MMP28Q9H239 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MMP28Q9H239 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MMP28Q9H239 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.14■□□□□ 0.97
MMP28Q9H239 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.14■□□□□ 0.97
MMP28Q9H239 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.14■□□□□ 0.97
MMP28Q9H239 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
MMP28Q9H239 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.13■□□□□ 0.97
MMP28Q9H239 AP004609.3-201ENST00000610705 1884 ntBASIC21.13■□□□□ 0.97
MMP28Q9H239 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MMP28Q9H239 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MMP28Q9H239 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.12■□□□□ 0.97
MMP28Q9H239 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms