Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD4Q6ZW05 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PTCHD4Q6ZW05 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD4Q6ZW05 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD4Q6ZW05 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD4Q6ZW05 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD4Q6ZW05 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD4Q6ZW05 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PTCHD4Q6ZW05 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PTCHD4Q6ZW05 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC22.2■■□□□ 1.14
PTCHD4Q6ZW05 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.2■■□□□ 1.14
PTCHD4Q6ZW05 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PTCHD4Q6ZW05 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.2■■□□□ 1.14
PTCHD4Q6ZW05 AC010501.1-201ENST00000606270 1962 ntBASIC22.19■■□□□ 1.14
PTCHD4Q6ZW05 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD4Q6ZW05 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCHD4Q6ZW05 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD4Q6ZW05 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD4Q6ZW05 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.18■■□□□ 1.14
PTCHD4Q6ZW05 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD4Q6ZW05 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD4Q6ZW05 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
PTCHD4Q6ZW05 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD4Q6ZW05 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.17■■□□□ 1.14
PTCHD4Q6ZW05 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
PTCHD4Q6ZW05 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD4Q6ZW05 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD4Q6ZW05 AC142381.3-201ENST00000568208 1670 ntBASIC22.17■■□□□ 1.14
PTCHD4Q6ZW05 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.17■■□□□ 1.14
PTCHD4Q6ZW05 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC22.16■■□□□ 1.14
PTCHD4Q6ZW05 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC22.16■■□□□ 1.14
PTCHD4Q6ZW05 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.16■■□□□ 1.14
PTCHD4Q6ZW05 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD4Q6ZW05 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.16■■□□□ 1.14
PTCHD4Q6ZW05 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD4Q6ZW05 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD4Q6ZW05 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD4Q6ZW05 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.15■■□□□ 1.14
PTCHD4Q6ZW05 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
PTCHD4Q6ZW05 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
PTCHD4Q6ZW05 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD4Q6ZW05 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PTCHD4Q6ZW05 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.14■■□□□ 1.14
PTCHD4Q6ZW05 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.14■■□□□ 1.13
PTCHD4Q6ZW05 LINC01971-201ENST00000617888 1048 ntBASIC22.14■■□□□ 1.13
PTCHD4Q6ZW05 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD4Q6ZW05 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD4Q6ZW05 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD4Q6ZW05 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD4Q6ZW05 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD4Q6ZW05 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.13■■□□□ 1.13
PTCHD4Q6ZW05 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD4Q6ZW05 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD4Q6ZW05 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD4Q6ZW05 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD4Q6ZW05 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD4Q6ZW05 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD4Q6ZW05 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD4Q6ZW05 MED17-227ENST00000640521 2047 ntTSL 5 BASIC22.12■■□□□ 1.13
PTCHD4Q6ZW05 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.12■■□□□ 1.13
PTCHD4Q6ZW05 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD4Q6ZW05 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD4Q6ZW05 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD4Q6ZW05 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD4Q6ZW05 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
PTCHD4Q6ZW05 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD4Q6ZW05 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD4Q6ZW05 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
PTCHD4Q6ZW05 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
PTCHD4Q6ZW05 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
PTCHD4Q6ZW05 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC22.1■■□□□ 1.13
PTCHD4Q6ZW05 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD4Q6ZW05 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD4Q6ZW05 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD4Q6ZW05 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.09■■□□□ 1.13
PTCHD4Q6ZW05 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD4Q6ZW05 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD4Q6ZW05 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD4Q6ZW05 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.09■■□□□ 1.13
PTCHD4Q6ZW05 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L13-201ENST00000554103 1267 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L15-201ENST00000611059 1267 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L23-201ENST00000615195 1269 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L24-201ENST00000617576 1269 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L22-201ENST00000618238 1269 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L20-201ENST00000619712 1269 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L21-201ENST00000622058 1269 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L10-201ENST00000622460 1267 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 DUX4L25-201ENST00000624915 1269 ntBASIC22.08■■□□□ 1.13
PTCHD4Q6ZW05 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PTCHD4Q6ZW05 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
PTCHD4Q6ZW05 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.08■■□□□ 1.12
PTCHD4Q6ZW05 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PTCHD4Q6ZW05 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD4Q6ZW05 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD4Q6ZW05 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD4Q6ZW05 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
PTCHD4Q6ZW05 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD4Q6ZW05 AC022211.4-201ENST00000625094 2161 ntBASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms