Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
KRT39Q6A163 AC091060.1-201ENST00000623524 1766 ntBASIC26.41■■□□□ 1.82
KRT39Q6A163 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.4■■□□□ 1.82
KRT39Q6A163 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
KRT39Q6A163 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
KRT39Q6A163 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
KRT39Q6A163 ECEL1P2-201ENST00000461596 1295 ntBASIC26.4■■□□□ 1.82
KRT39Q6A163 AC025884.2-201ENST00000553429 711 ntBASIC26.4■■□□□ 1.82
KRT39Q6A163 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
KRT39Q6A163 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.39■■□□□ 1.82
KRT39Q6A163 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.39■■□□□ 1.82
KRT39Q6A163 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.39■■□□□ 1.82
KRT39Q6A163 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
KRT39Q6A163 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.38■■□□□ 1.81
KRT39Q6A163 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
KRT39Q6A163 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC26.38■■□□□ 1.81
KRT39Q6A163 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
KRT39Q6A163 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
KRT39Q6A163 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
KRT39Q6A163 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
KRT39Q6A163 AC092803.2-201ENST00000564287 1899 ntBASIC26.37■■□□□ 1.81
KRT39Q6A163 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.37■■□□□ 1.81
KRT39Q6A163 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.37■■□□□ 1.81
KRT39Q6A163 ABHD17AP3-201ENST00000503096 1137 ntBASIC26.37■■□□□ 1.81
KRT39Q6A163 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
KRT39Q6A163 SMPD5-203ENST00000639008 1464 ntBASIC26.36■■□□□ 1.81
KRT39Q6A163 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
KRT39Q6A163 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.36■■□□□ 1.81
KRT39Q6A163 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.36■■□□□ 1.81
KRT39Q6A163 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.36■■□□□ 1.81
KRT39Q6A163 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.36■■□□□ 1.81
KRT39Q6A163 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.35■■□□□ 1.81
KRT39Q6A163 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
KRT39Q6A163 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC26.34■■□□□ 1.81
KRT39Q6A163 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
KRT39Q6A163 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
KRT39Q6A163 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
KRT39Q6A163 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
KRT39Q6A163 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.33■■□□□ 1.81
KRT39Q6A163 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
KRT39Q6A163 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
KRT39Q6A163 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.33■■□□□ 1.81
KRT39Q6A163 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.32■■□□□ 1.8
KRT39Q6A163 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
KRT39Q6A163 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.32■■□□□ 1.8
KRT39Q6A163 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC26.32■■□□□ 1.8
KRT39Q6A163 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
KRT39Q6A163 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
KRT39Q6A163 AC145676.1-201ENST00000514988 2004 ntBASIC26.31■■□□□ 1.8
KRT39Q6A163 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.31■■□□□ 1.8
KRT39Q6A163 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
KRT39Q6A163 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
KRT39Q6A163 MIR3960-201ENST00000583311 91 ntBASIC26.3■■□□□ 1.8
KRT39Q6A163 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
KRT39Q6A163 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
KRT39Q6A163 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
KRT39Q6A163 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.29■■□□□ 1.8
KRT39Q6A163 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
KRT39Q6A163 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.29■■□□□ 1.8
KRT39Q6A163 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
KRT39Q6A163 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.29■■□□□ 1.8
KRT39Q6A163 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
KRT39Q6A163 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.29■■□□□ 1.8
KRT39Q6A163 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT39Q6A163 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT39Q6A163 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
KRT39Q6A163 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.28■■□□□ 1.8
KRT39Q6A163 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT39Q6A163 DUSP8P4-201ENST00000399538 1761 ntBASIC26.28■■□□□ 1.8
KRT39Q6A163 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.27■■□□□ 1.8
KRT39Q6A163 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.27■■□□□ 1.8
KRT39Q6A163 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.27■■□□□ 1.8
KRT39Q6A163 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
KRT39Q6A163 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
KRT39Q6A163 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
KRT39Q6A163 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.27■■□□□ 1.8
KRT39Q6A163 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.26■■□□□ 1.79
KRT39Q6A163 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
KRT39Q6A163 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
KRT39Q6A163 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
KRT39Q6A163 RNF126P1-201ENST00000567452 1320 ntBASIC26.25■■□□□ 1.79
KRT39Q6A163 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.25■■□□□ 1.79
KRT39Q6A163 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC26.25■■□□□ 1.79
KRT39Q6A163 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
KRT39Q6A163 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
KRT39Q6A163 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
KRT39Q6A163 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
KRT39Q6A163 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT39Q6A163 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT39Q6A163 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.23■■□□□ 1.79
KRT39Q6A163 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT39Q6A163 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC26.23■■□□□ 1.79
KRT39Q6A163 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT39Q6A163 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.23■■□□□ 1.79
KRT39Q6A163 AC007029.1-201ENST00000604183 313 ntBASIC26.23■■□□□ 1.79
KRT39Q6A163 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT39Q6A163 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT39Q6A163 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.23■■□□□ 1.79
KRT39Q6A163 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.22■■□□□ 1.79
KRT39Q6A163 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms