Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF404Q494X3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
ZNF404Q494X3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF404Q494X3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
ZNF404Q494X3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
ZNF404Q494X3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
ZNF404Q494X3 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF404Q494X3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF404Q494X3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
ZNF404Q494X3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
ZNF404Q494X3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.88■■□□□ 1.09
ZNF404Q494X3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF404Q494X3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.88■■□□□ 1.09
ZNF404Q494X3 ABHD17AP4-201ENST00000411545 909 ntBASIC21.88■■□□□ 1.09
ZNF404Q494X3 AC021231.2-201ENST00000594613 730 ntBASIC21.88■■□□□ 1.09
ZNF404Q494X3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.88■■□□□ 1.09
ZNF404Q494X3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF404Q494X3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF404Q494X3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF404Q494X3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF404Q494X3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF404Q494X3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF404Q494X3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
ZNF404Q494X3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.87■■□□□ 1.09
ZNF404Q494X3 AL139125.2-201ENST00000623134 1869 ntBASIC21.86■■□□□ 1.09
ZNF404Q494X3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF404Q494X3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.86■■□□□ 1.09
ZNF404Q494X3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF404Q494X3 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF404Q494X3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.86■■□□□ 1.09
ZNF404Q494X3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF404Q494X3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF404Q494X3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.85■■□□□ 1.09
ZNF404Q494X3 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.85■■□□□ 1.09
ZNF404Q494X3 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF404Q494X3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF404Q494X3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF404Q494X3 AP004609.3-201ENST00000610705 1884 ntBASIC21.84■■□□□ 1.09
ZNF404Q494X3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF404Q494X3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF404Q494X3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF404Q494X3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF404Q494X3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF404Q494X3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.84■■□□□ 1.09
ZNF404Q494X3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF404Q494X3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.83■■□□□ 1.09
ZNF404Q494X3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF404Q494X3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.83■■□□□ 1.09
ZNF404Q494X3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
ZNF404Q494X3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.08
ZNF404Q494X3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF404Q494X3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF404Q494X3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF404Q494X3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF404Q494X3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
ZNF404Q494X3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF404Q494X3 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
ZNF404Q494X3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
ZNF404Q494X3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF404Q494X3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF404Q494X3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF404Q494X3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF404Q494X3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.81■■□□□ 1.08
ZNF404Q494X3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
ZNF404Q494X3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
ZNF404Q494X3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.81■■□□□ 1.08
ZNF404Q494X3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF404Q494X3 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF404Q494X3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF404Q494X3 LINC00543-201ENST00000567234 1845 ntBASIC21.8■■□□□ 1.08
ZNF404Q494X3 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.8■■□□□ 1.08
ZNF404Q494X3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF404Q494X3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF404Q494X3 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
ZNF404Q494X3 ZNRF2P2-203ENST00000454624 420 ntBASIC21.79■■□□□ 1.08
ZNF404Q494X3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF404Q494X3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF404Q494X3 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.79■■□□□ 1.08
ZNF404Q494X3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF404Q494X3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF404Q494X3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
ZNF404Q494X3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF404Q494X3 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF404Q494X3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF404Q494X3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
ZNF404Q494X3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF404Q494X3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF404Q494X3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF404Q494X3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF404Q494X3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
ZNF404Q494X3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.77■■□□□ 1.08
ZNF404Q494X3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.77■■□□□ 1.08
ZNF404Q494X3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF404Q494X3 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
ZNF404Q494X3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF404Q494X3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
ZNF404Q494X3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.76■■□□□ 1.07
ZNF404Q494X3 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF404Q494X3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF404Q494X3 AC079834.2-201ENST00000609776 1949 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms