Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
FOXA1P55317 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.62■■□□□ 1.37
FOXA1P55317 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
FOXA1P55317 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
FOXA1P55317 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
FOXA1P55317 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
FOXA1P55317 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
FOXA1P55317 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
FOXA1P55317 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
FOXA1P55317 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
FOXA1P55317 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
FOXA1P55317 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
FOXA1P55317 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
FOXA1P55317 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
FOXA1P55317 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
FOXA1P55317 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.6■■□□□ 1.37
FOXA1P55317 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.6■■□□□ 1.37
FOXA1P55317 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
FOXA1P55317 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
FOXA1P55317 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.59■■□□□ 1.37
FOXA1P55317 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
FOXA1P55317 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
FOXA1P55317 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
FOXA1P55317 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
FOXA1P55317 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.58■■□□□ 1.37
FOXA1P55317 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.58■■□□□ 1.37
FOXA1P55317 AL359258.2-201ENST00000564063 1566 ntBASIC23.58■■□□□ 1.37
FOXA1P55317 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
FOXA1P55317 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.58■■□□□ 1.37
FOXA1P55317 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.58■■□□□ 1.37
FOXA1P55317 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.58■■□□□ 1.37
FOXA1P55317 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
FOXA1P55317 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXA1P55317 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.57■■□□□ 1.36
FOXA1P55317 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXA1P55317 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.56■■□□□ 1.36
FOXA1P55317 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
FOXA1P55317 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
FOXA1P55317 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.56■■□□□ 1.36
FOXA1P55317 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
FOXA1P55317 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.56■■□□□ 1.36
FOXA1P55317 CR559946.2-201ENST00000623684 991 ntBASIC23.56■■□□□ 1.36
FOXA1P55317 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
FOXA1P55317 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
FOXA1P55317 AL359504.2-201ENST00000605506 1601 ntBASIC23.55■■□□□ 1.36
FOXA1P55317 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
FOXA1P55317 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
FOXA1P55317 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
FOXA1P55317 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
FOXA1P55317 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
FOXA1P55317 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.54■■□□□ 1.36
FOXA1P55317 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
FOXA1P55317 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
FOXA1P55317 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.54■■□□□ 1.36
FOXA1P55317 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
FOXA1P55317 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.53■■□□□ 1.36
FOXA1P55317 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
FOXA1P55317 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.53■■□□□ 1.36
FOXA1P55317 AC096887.2-201ENST00000623443 1957 ntBASIC23.53■■□□□ 1.36
FOXA1P55317 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXA1P55317 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXA1P55317 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXA1P55317 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
FOXA1P55317 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXA1P55317 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXA1P55317 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
FOXA1P55317 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
FOXA1P55317 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
FOXA1P55317 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.52■■□□□ 1.36
FOXA1P55317 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
FOXA1P55317 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
FOXA1P55317 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
FOXA1P55317 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
FOXA1P55317 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
FOXA1P55317 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
FOXA1P55317 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
FOXA1P55317 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.51■■□□□ 1.35
FOXA1P55317 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.51■■□□□ 1.35
FOXA1P55317 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
FOXA1P55317 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
FOXA1P55317 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
FOXA1P55317 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.5■■□□□ 1.35
FOXA1P55317 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.5■■□□□ 1.35
FOXA1P55317 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.49■■□□□ 1.35
FOXA1P55317 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
FOXA1P55317 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
FOXA1P55317 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
FOXA1P55317 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.49■■□□□ 1.35
FOXA1P55317 ABHD17AP4-201ENST00000411545 909 ntBASIC23.49■■□□□ 1.35
FOXA1P55317 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.49■■□□□ 1.35
FOXA1P55317 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
FOXA1P55317 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.49■■□□□ 1.35
FOXA1P55317 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
FOXA1P55317 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.49■■□□□ 1.35
FOXA1P55317 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.48■■□□□ 1.35
FOXA1P55317 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
FOXA1P55317 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
FOXA1P55317 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
FOXA1P55317 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
FOXA1P55317 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms