Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 SHF-207ENST00000560540 2062 ntTSL 5 BASIC32.71■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC32.71■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC32.7■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC32.7■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC32.7■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC32.7■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 AC091060.1-201ENST00000623524 1766 ntBASIC32.69■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.69■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC32.69■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC32.69■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC32.68■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 TPT1-202ENST00000379055 948 ntTSL 2 BASIC32.68■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC32.68■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC32.66■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 CEP120-209ENST00000515110 606 ntTSL 3 BASIC32.66■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC32.66■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC32.65■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.65■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC32.65■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC32.65■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC32.64■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC32.64■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
SENP3-EIF4A1A0A087X0R7 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 AC142472.1-201ENST00000612013 1741 ntBASIC32.63■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC32.62■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC32.62■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC32.62■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC32.61■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC32.61■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 AL359504.2-201ENST00000605506 1601 ntBASIC32.61■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC32.61■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC32.6■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 AL035685.1-201ENST00000636663 812 ntBASIC32.6■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC32.59■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 ERN1-208ENST00000606895 2068 ntBASIC32.59■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC32.59■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC32.59■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC32.59■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC32.58■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC32.58■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC32.58■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.81
SENP3-EIF4A1A0A087X0R7 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC32.57■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC32.57■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC32.57■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC32.56■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC32.56■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC32.55■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC32.53■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC32.53■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC32.53■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC32.52■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC32.52■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 AC131212.1-201ENST00000613771 668 ntBASIC32.52■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
SENP3-EIF4A1A0A087X0R7 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC32.51■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 MOB2-207ENST00000614710 705 ntTSL 5 BASIC32.5■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms