Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
MMP28Q9H239 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MMP28Q9H239 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MMP28Q9H239 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.44■■□□□ 1.02
MMP28Q9H239 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
MMP28Q9H239 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
MMP28Q9H239 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
MMP28Q9H239 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.44■■□□□ 1.02
MMP28Q9H239 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MMP28Q9H239 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MMP28Q9H239 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
MMP28Q9H239 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.43■■□□□ 1.02
MMP28Q9H239 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MMP28Q9H239 DUX4L28-201ENST00000623687 678 ntBASIC21.43■■□□□ 1.02
MMP28Q9H239 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.43■■□□□ 1.02
MMP28Q9H239 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MMP28Q9H239 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MMP28Q9H239 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MMP28Q9H239 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.42■■□□□ 1.02
MMP28Q9H239 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MMP28Q9H239 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MMP28Q9H239 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MMP28Q9H239 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MMP28Q9H239 AC012676.1-201ENST00000574705 1949 ntBASIC21.41■■□□□ 1.02
MMP28Q9H239 AC100797.4-201ENST00000631653 1827 ntBASIC21.41■■□□□ 1.02
MMP28Q9H239 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
MMP28Q9H239 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.4■■□□□ 1.02
MMP28Q9H239 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MMP28Q9H239 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MMP28Q9H239 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
MMP28Q9H239 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MMP28Q9H239 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
MMP28Q9H239 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
MMP28Q9H239 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
MMP28Q9H239 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.39■■□□□ 1.02
MMP28Q9H239 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
MMP28Q9H239 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.39■■□□□ 1.01
MMP28Q9H239 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.39■■□□□ 1.01
MMP28Q9H239 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
MMP28Q9H239 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
MMP28Q9H239 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
MMP28Q9H239 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MMP28Q9H239 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MMP28Q9H239 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MMP28Q9H239 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.38■■□□□ 1.01
MMP28Q9H239 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MMP28Q9H239 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MMP28Q9H239 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.37■■□□□ 1.01
MMP28Q9H239 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
MMP28Q9H239 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
MMP28Q9H239 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MMP28Q9H239 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MMP28Q9H239 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MMP28Q9H239 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MMP28Q9H239 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.36■■□□□ 1.01
MMP28Q9H239 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MMP28Q9H239 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MMP28Q9H239 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MMP28Q9H239 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
MMP28Q9H239 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MMP28Q9H239 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MMP28Q9H239 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MMP28Q9H239 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.34■■□□□ 1.01
MMP28Q9H239 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
MMP28Q9H239 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.34■■□□□ 1.01
MMP28Q9H239 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MMP28Q9H239 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MMP28Q9H239 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MMP28Q9H239 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MMP28Q9H239 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
MMP28Q9H239 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
MMP28Q9H239 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.33■■□□□ 1
MMP28Q9H239 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
MMP28Q9H239 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.32■■□□□ 1
MMP28Q9H239 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
MMP28Q9H239 AP002414.2-202ENST00000590929 1450 ntBASIC21.32■■□□□ 1
MMP28Q9H239 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MMP28Q9H239 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MMP28Q9H239 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MMP28Q9H239 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.3■■□□□ 1
MMP28Q9H239 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
MMP28Q9H239 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MMP28Q9H239 AC087741.3-201ENST00000624270 1347 ntBASIC21.29■■□□□ 1
MMP28Q9H239 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MMP28Q9H239 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MMP28Q9H239 AC108673.1-201ENST00000510422 1159 ntBASIC21.29■■□□□ 1
MMP28Q9H239 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.29■■□□□ 1
MMP28Q9H239 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MMP28Q9H239 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.28■■□□□ 1
MMP28Q9H239 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.28■■□□□ 1
MMP28Q9H239 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.28■■□□□ 1
MMP28Q9H239 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MMP28Q9H239 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MMP28Q9H239 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.28■■□□□ 1
MMP28Q9H239 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.28■■□□□ 1
MMP28Q9H239 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MMP28Q9H239 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MMP28Q9H239 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.27■■□□□ 1
MMP28Q9H239 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.27■■□□□ 1
MMP28Q9H239 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms