Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 AC008406.3-201ENST00000620001 1374 ntBASIC21.14■□□□□ 0.97
SPG11Q96JI7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SPG11Q96JI7 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SPG11Q96JI7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.13■□□□□ 0.97
SPG11Q96JI7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.13■□□□□ 0.97
SPG11Q96JI7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.13■□□□□ 0.97
SPG11Q96JI7 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SPG11Q96JI7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.12■□□□□ 0.97
SPG11Q96JI7 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.12■□□□□ 0.97
SPG11Q96JI7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SPG11Q96JI7 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SPG11Q96JI7 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.11■□□□□ 0.97
SPG11Q96JI7 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
SPG11Q96JI7 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SPG11Q96JI7 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SPG11Q96JI7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.11■□□□□ 0.97
SPG11Q96JI7 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SPG11Q96JI7 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SPG11Q96JI7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SPG11Q96JI7 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.09■□□□□ 0.97
SPG11Q96JI7 MIR3960-201ENST00000583311 91 ntBASIC21.09■□□□□ 0.97
SPG11Q96JI7 AP004833.2-201ENST00000532228 1454 ntBASIC21.09■□□□□ 0.97
SPG11Q96JI7 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SPG11Q96JI7 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SPG11Q96JI7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SPG11Q96JI7 ST7-AS1-201ENST00000456775 1889 ntBASIC21.09■□□□□ 0.97
SPG11Q96JI7 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.09■□□□□ 0.97
SPG11Q96JI7 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SPG11Q96JI7 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SPG11Q96JI7 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SPG11Q96JI7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.08■□□□□ 0.96
SPG11Q96JI7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.08■□□□□ 0.96
SPG11Q96JI7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
SPG11Q96JI7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SPG11Q96JI7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SPG11Q96JI7 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SPG11Q96JI7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.07■□□□□ 0.96
SPG11Q96JI7 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SPG11Q96JI7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SPG11Q96JI7 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SPG11Q96JI7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.06■□□□□ 0.96
SPG11Q96JI7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SPG11Q96JI7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.06■□□□□ 0.96
SPG11Q96JI7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.06■□□□□ 0.96
SPG11Q96JI7 KRT125P-201ENST00000546827 989 ntBASIC21.05■□□□□ 0.96
SPG11Q96JI7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.05■□□□□ 0.96
SPG11Q96JI7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SPG11Q96JI7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.05■□□□□ 0.96
SPG11Q96JI7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SPG11Q96JI7 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SPG11Q96JI7 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SPG11Q96JI7 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SPG11Q96JI7 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.04■□□□□ 0.96
SPG11Q96JI7 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SPG11Q96JI7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SPG11Q96JI7 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SPG11Q96JI7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SPG11Q96JI7 ABCB10P3-201ENST00000561950 2166 ntBASIC21.02■□□□□ 0.96
SPG11Q96JI7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SPG11Q96JI7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.02■□□□□ 0.96
SPG11Q96JI7 AC019171.1-201ENST00000601251 1056 ntBASIC21.02■□□□□ 0.96
SPG11Q96JI7 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.02■□□□□ 0.95
SPG11Q96JI7 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
SPG11Q96JI7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.02■□□□□ 0.95
SPG11Q96JI7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.02■□□□□ 0.95
SPG11Q96JI7 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SPG11Q96JI7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SPG11Q96JI7 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21■□□□□ 0.95
SPG11Q96JI7 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21■□□□□ 0.95
SPG11Q96JI7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21■□□□□ 0.95
SPG11Q96JI7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
SPG11Q96JI7 GRAMD4P7-201ENST00000578182 1232 ntBASIC21■□□□□ 0.95
SPG11Q96JI7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SPG11Q96JI7 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SPG11Q96JI7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SPG11Q96JI7 MIR4787-201ENST00000607364 84 ntBASIC20.99■□□□□ 0.95
SPG11Q96JI7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
SPG11Q96JI7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SPG11Q96JI7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SPG11Q96JI7 AC087393.1-201ENST00000582896 145 ntBASIC20.99■□□□□ 0.95
SPG11Q96JI7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SPG11Q96JI7 MIR638-201ENST00000385237 100 ntBASIC20.98■□□□□ 0.95
SPG11Q96JI7 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
SPG11Q96JI7 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SPG11Q96JI7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SPG11Q96JI7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SPG11Q96JI7 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SPG11Q96JI7 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SPG11Q96JI7 AL139393.2-201ENST00000608721 2025 ntBASIC20.96■□□□□ 0.95
SPG11Q96JI7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.96■□□□□ 0.95
SPG11Q96JI7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.96■□□□□ 0.95
SPG11Q96JI7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SPG11Q96JI7 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.95■□□□□ 0.94
SPG11Q96JI7 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SPG11Q96JI7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.95■□□□□ 0.94
SPG11Q96JI7 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.95■□□□□ 0.94
SPG11Q96JI7 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.95■□□□□ 0.94
SPG11Q96JI7 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.95■□□□□ 0.94
SPG11Q96JI7 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SPG11Q96JI7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms