Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ALMS1Q8TCU4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC17■□□□□ 0.31
ALMS1Q8TCU4 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ALMS1Q8TCU4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC16.99■□□□□ 0.31
ALMS1Q8TCU4 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ALMS1Q8TCU4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC16.99■□□□□ 0.31
ALMS1Q8TCU4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC16.99■□□□□ 0.31
ALMS1Q8TCU4 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
ALMS1Q8TCU4 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
ALMS1Q8TCU4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC16.99■□□□□ 0.31
ALMS1Q8TCU4 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC16.99■□□□□ 0.31
ALMS1Q8TCU4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
ALMS1Q8TCU4 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
ALMS1Q8TCU4 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
ALMS1Q8TCU4 UNC93B8-201ENST00000511903 705 ntBASIC16.98■□□□□ 0.31
ALMS1Q8TCU4 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ALMS1Q8TCU4 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 AC131281.2-201ENST00000520478 145 ntBASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ALMS1Q8TCU4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 AC087393.1-201ENST00000582896 145 ntBASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 MIR4787-201ENST00000607364 84 ntBASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC16.96■□□□□ 0.31
ALMS1Q8TCU4 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
ALMS1Q8TCU4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC16.96■□□□□ 0.3
ALMS1Q8TCU4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
ALMS1Q8TCU4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC16.96■□□□□ 0.3
ALMS1Q8TCU4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC16.95■□□□□ 0.3
ALMS1Q8TCU4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ALMS1Q8TCU4 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC16.93■□□□□ 0.3
ALMS1Q8TCU4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ALMS1Q8TCU4 AL139246.5-201ENST00000606645 996 ntBASIC16.93■□□□□ 0.3
ALMS1Q8TCU4 AC100797.4-201ENST00000631653 1827 ntBASIC16.93■□□□□ 0.3
ALMS1Q8TCU4 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ALMS1Q8TCU4 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC16.93■□□□□ 0.3
ALMS1Q8TCU4 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ALMS1Q8TCU4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC16.93■□□□□ 0.3
ALMS1Q8TCU4 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 AC019171.1-201ENST00000601251 1056 ntBASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ALMS1Q8TCU4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
ALMS1Q8TCU4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
ALMS1Q8TCU4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ALMS1Q8TCU4 KRT125P-201ENST00000546827 989 ntBASIC16.91■□□□□ 0.3
ALMS1Q8TCU4 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ALMS1Q8TCU4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC16.91■□□□□ 0.3
ALMS1Q8TCU4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 RARRES2P6-201ENST00000567333 442 ntBASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 MTX2-204ENST00000443241 799 ntTSL 3 BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC16.9■□□□□ 0.3
ALMS1Q8TCU4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ALMS1Q8TCU4 KRT16P3-201ENST00000439127 1283 ntBASIC16.89■□□□□ 0.29
ALMS1Q8TCU4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ALMS1Q8TCU4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ALMS1Q8TCU4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
ALMS1Q8TCU4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ALMS1Q8TCU4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC16.88■□□□□ 0.29
ALMS1Q8TCU4 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC16.88■□□□□ 0.29
ALMS1Q8TCU4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC16.88■□□□□ 0.29
ALMS1Q8TCU4 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ALMS1Q8TCU4 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ALMS1Q8TCU4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC16.87■□□□□ 0.29
ALMS1Q8TCU4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ALMS1Q8TCU4 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ALMS1Q8TCU4 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ALMS1Q8TCU4 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ALMS1Q8TCU4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ALMS1Q8TCU4 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ALMS1Q8TCU4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC16.85■□□□□ 0.29
ALMS1Q8TCU4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
ALMS1Q8TCU4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms