Protein–RNA interactions for Protein: Q8IYJ1

CPNE9, Copine-9, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE9Q8IYJ1 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CPNE9Q8IYJ1 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
CPNE9Q8IYJ1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.26■■□□□ 1.47
CPNE9Q8IYJ1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC24.26■■□□□ 1.47
CPNE9Q8IYJ1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
CPNE9Q8IYJ1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CPNE9Q8IYJ1 AL359258.2-201ENST00000564063 1566 ntBASIC24.25■■□□□ 1.47
CPNE9Q8IYJ1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC24.25■■□□□ 1.47
CPNE9Q8IYJ1 MED25-210ENST00000612854 801 ntTSL 5 BASIC24.25■■□□□ 1.47
CPNE9Q8IYJ1 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CPNE9Q8IYJ1 MED25-214ENST00000622402 642 ntTSL 5 BASIC24.25■■□□□ 1.47
CPNE9Q8IYJ1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CPNE9Q8IYJ1 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.24■■□□□ 1.47
CPNE9Q8IYJ1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.24■■□□□ 1.47
CPNE9Q8IYJ1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.24■■□□□ 1.47
CPNE9Q8IYJ1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC24.24■■□□□ 1.47
CPNE9Q8IYJ1 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.24■■□□□ 1.47
CPNE9Q8IYJ1 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CPNE9Q8IYJ1 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
CPNE9Q8IYJ1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.23■■□□□ 1.47
CPNE9Q8IYJ1 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
CPNE9Q8IYJ1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.23■■□□□ 1.47
CPNE9Q8IYJ1 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CPNE9Q8IYJ1 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CPNE9Q8IYJ1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
CPNE9Q8IYJ1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CPNE9Q8IYJ1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CPNE9Q8IYJ1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CPNE9Q8IYJ1 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CPNE9Q8IYJ1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
CPNE9Q8IYJ1 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CPNE9Q8IYJ1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.2■■□□□ 1.46
CPNE9Q8IYJ1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CPNE9Q8IYJ1 AC091060.1-201ENST00000623524 1766 ntBASIC24.2■■□□□ 1.46
CPNE9Q8IYJ1 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CPNE9Q8IYJ1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.2■■□□□ 1.46
CPNE9Q8IYJ1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CPNE9Q8IYJ1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CPNE9Q8IYJ1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CPNE9Q8IYJ1 MIR639-201ENST00000384974 98 ntBASIC24.19■■□□□ 1.46
CPNE9Q8IYJ1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CPNE9Q8IYJ1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CPNE9Q8IYJ1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CPNE9Q8IYJ1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
CPNE9Q8IYJ1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC24.18■■□□□ 1.46
CPNE9Q8IYJ1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
CPNE9Q8IYJ1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC24.17■■□□□ 1.46
CPNE9Q8IYJ1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC24.17■■□□□ 1.46
CPNE9Q8IYJ1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CPNE9Q8IYJ1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CPNE9Q8IYJ1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC24.16■■□□□ 1.46
CPNE9Q8IYJ1 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
CPNE9Q8IYJ1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.15■■□□□ 1.46
CPNE9Q8IYJ1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CPNE9Q8IYJ1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.15■■□□□ 1.46
CPNE9Q8IYJ1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CPNE9Q8IYJ1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.14■■□□□ 1.45
CPNE9Q8IYJ1 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.14■■□□□ 1.45
CPNE9Q8IYJ1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CPNE9Q8IYJ1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
CPNE9Q8IYJ1 AC126177.7-201ENST00000547904 679 ntBASIC24.13■■□□□ 1.45
CPNE9Q8IYJ1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CPNE9Q8IYJ1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CPNE9Q8IYJ1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.13■■□□□ 1.45
CPNE9Q8IYJ1 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 AL359504.2-201ENST00000605506 1601 ntBASIC24.12■■□□□ 1.45
CPNE9Q8IYJ1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.11■■□□□ 1.45
CPNE9Q8IYJ1 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
CPNE9Q8IYJ1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
CPNE9Q8IYJ1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
CPNE9Q8IYJ1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.11■■□□□ 1.45
CPNE9Q8IYJ1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.11■■□□□ 1.45
CPNE9Q8IYJ1 AC092803.2-201ENST00000564287 1899 ntBASIC24.11■■□□□ 1.45
CPNE9Q8IYJ1 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE9Q8IYJ1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE9Q8IYJ1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
CPNE9Q8IYJ1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.1■■□□□ 1.45
CPNE9Q8IYJ1 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE9Q8IYJ1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC24.1■■□□□ 1.45
CPNE9Q8IYJ1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CPNE9Q8IYJ1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CPNE9Q8IYJ1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.09■■□□□ 1.45
CPNE9Q8IYJ1 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.09■■□□□ 1.45
CPNE9Q8IYJ1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CPNE9Q8IYJ1 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
CPNE9Q8IYJ1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
CPNE9Q8IYJ1 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms