Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
LSM1O15116 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
LSM1O15116 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
LSM1O15116 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
LSM1O15116 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
LSM1O15116 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
LSM1O15116 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.6■■□□□ 1.37
LSM1O15116 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LSM1O15116 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LSM1O15116 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
LSM1O15116 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
LSM1O15116 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.59■■□□□ 1.37
LSM1O15116 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LSM1O15116 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LSM1O15116 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.58■■□□□ 1.37
LSM1O15116 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
LSM1O15116 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.58■■□□□ 1.36
LSM1O15116 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.58■■□□□ 1.36
LSM1O15116 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LSM1O15116 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.57■■□□□ 1.36
LSM1O15116 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
LSM1O15116 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LSM1O15116 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.57■■□□□ 1.36
LSM1O15116 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.56■■□□□ 1.36
LSM1O15116 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
LSM1O15116 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LSM1O15116 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LSM1O15116 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.56■■□□□ 1.36
LSM1O15116 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LSM1O15116 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
LSM1O15116 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
LSM1O15116 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.55■■□□□ 1.36
LSM1O15116 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.55■■□□□ 1.36
LSM1O15116 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
LSM1O15116 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.55■■□□□ 1.36
LSM1O15116 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
LSM1O15116 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
LSM1O15116 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
LSM1O15116 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LSM1O15116 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.54■■□□□ 1.36
LSM1O15116 AC008813.1-201ENST00000536597 885 ntBASIC23.54■■□□□ 1.36
LSM1O15116 DUX4L11-201ENST00000611504 1267 ntBASIC23.54■■□□□ 1.36
LSM1O15116 DUX4L12-201ENST00000614593 1267 ntBASIC23.54■■□□□ 1.36
LSM1O15116 DUX4L14-201ENST00000621227 1267 ntBASIC23.54■■□□□ 1.36
LSM1O15116 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.54■■□□□ 1.36
LSM1O15116 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.54■■□□□ 1.36
LSM1O15116 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
LSM1O15116 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.53■■□□□ 1.36
LSM1O15116 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.53■■□□□ 1.36
LSM1O15116 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
LSM1O15116 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
LSM1O15116 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
LSM1O15116 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
LSM1O15116 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.52■■□□□ 1.36
LSM1O15116 MIR219A2-201ENST00000608502 1504 ntBASIC23.52■■□□□ 1.36
LSM1O15116 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.51■■□□□ 1.35
LSM1O15116 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
LSM1O15116 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.51■■□□□ 1.35
LSM1O15116 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LSM1O15116 AC148477.6-201ENST00000623746 465 ntBASIC23.51■■□□□ 1.35
LSM1O15116 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LSM1O15116 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
LSM1O15116 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
LSM1O15116 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
LSM1O15116 ERN1-208ENST00000606895 2068 ntBASIC23.49■■□□□ 1.35
LSM1O15116 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LSM1O15116 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
LSM1O15116 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.49■■□□□ 1.35
LSM1O15116 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LSM1O15116 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.48■■□□□ 1.35
LSM1O15116 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
LSM1O15116 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
LSM1O15116 AC010501.1-201ENST00000606270 1962 ntBASIC23.47■■□□□ 1.35
LSM1O15116 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
LSM1O15116 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.47■■□□□ 1.35
LSM1O15116 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
LSM1O15116 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
LSM1O15116 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
LSM1O15116 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LSM1O15116 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LSM1O15116 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LSM1O15116 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LSM1O15116 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LSM1O15116 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.46■■□□□ 1.35
LSM1O15116 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LSM1O15116 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.46■■□□□ 1.35
LSM1O15116 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LSM1O15116 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
LSM1O15116 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
LSM1O15116 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
LSM1O15116 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.35
LSM1O15116 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
LSM1O15116 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
LSM1O15116 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.45■■□□□ 1.34
LSM1O15116 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
LSM1O15116 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.44■■□□□ 1.34
LSM1O15116 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LSM1O15116 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LSM1O15116 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.44■■□□□ 1.34
LSM1O15116 ZNRF2P2-203ENST00000454624 420 ntBASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms