Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.89■■□□□ 1.25
HMGN4O00479 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC22.89■■□□□ 1.25
HMGN4O00479 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
HMGN4O00479 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
HMGN4O00479 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
HMGN4O00479 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGN4O00479 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
HMGN4O00479 CR559946.2-201ENST00000623684 991 ntBASIC22.88■■□□□ 1.25
HMGN4O00479 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.88■■□□□ 1.25
HMGN4O00479 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGN4O00479 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
HMGN4O00479 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGN4O00479 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HMGN4O00479 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC22.87■■□□□ 1.25
HMGN4O00479 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGN4O00479 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGN4O00479 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGN4O00479 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGN4O00479 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.87■■□□□ 1.25
HMGN4O00479 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGN4O00479 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGN4O00479 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.85■■□□□ 1.25
HMGN4O00479 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
HMGN4O00479 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.85■■□□□ 1.25
HMGN4O00479 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
HMGN4O00479 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.84■■□□□ 1.25
HMGN4O00479 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
HMGN4O00479 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGN4O00479 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGN4O00479 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC22.84■■□□□ 1.25
HMGN4O00479 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGN4O00479 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGN4O00479 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGN4O00479 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
HMGN4O00479 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
HMGN4O00479 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
HMGN4O00479 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGN4O00479 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
HMGN4O00479 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGN4O00479 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
HMGN4O00479 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.82■■□□□ 1.24
HMGN4O00479 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
HMGN4O00479 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
HMGN4O00479 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGN4O00479 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
HMGN4O00479 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
HMGN4O00479 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.82■■□□□ 1.24
HMGN4O00479 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGN4O00479 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGN4O00479 MIR3648-2-201ENST00000581792 180 ntBASIC22.81■■□□□ 1.24
HMGN4O00479 MIR3648-1-201ENST00000615959 180 ntBASIC22.81■■□□□ 1.24
HMGN4O00479 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGN4O00479 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGN4O00479 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGN4O00479 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.81■■□□□ 1.24
HMGN4O00479 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
HMGN4O00479 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
HMGN4O00479 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
HMGN4O00479 AL359258.2-201ENST00000564063 1566 ntBASIC22.8■■□□□ 1.24
HMGN4O00479 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
HMGN4O00479 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.8■■□□□ 1.24
HMGN4O00479 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
HMGN4O00479 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.8■■□□□ 1.24
HMGN4O00479 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
HMGN4O00479 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
HMGN4O00479 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGN4O00479 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGN4O00479 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
HMGN4O00479 AC020928.2-201ENST00000588717 2197 ntBASIC22.79■■□□□ 1.24
HMGN4O00479 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGN4O00479 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGN4O00479 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
HMGN4O00479 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.78■■□□□ 1.24
HMGN4O00479 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGN4O00479 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGN4O00479 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGN4O00479 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC22.78■■□□□ 1.24
HMGN4O00479 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.78■■□□□ 1.24
HMGN4O00479 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.78■■□□□ 1.24
HMGN4O00479 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGN4O00479 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGN4O00479 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
HMGN4O00479 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
HMGN4O00479 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.77■■□□□ 1.24
HMGN4O00479 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.77■■□□□ 1.23
HMGN4O00479 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGN4O00479 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
HMGN4O00479 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
HMGN4O00479 MED25-210ENST00000612854 801 ntTSL 5 BASIC22.76■■□□□ 1.23
HMGN4O00479 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
HMGN4O00479 MED25-214ENST00000622402 642 ntTSL 5 BASIC22.76■■□□□ 1.23
HMGN4O00479 ERN1-208ENST00000606895 2068 ntBASIC22.76■■□□□ 1.23
HMGN4O00479 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGN4O00479 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.75■■□□□ 1.23
HMGN4O00479 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
HMGN4O00479 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGN4O00479 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGN4O00479 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGN4O00479 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.75■■□□□ 1.23
HMGN4O00479 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms