Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.36■■□□□ 1.81
FOXN3O00409 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
FOXN3O00409 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.35■■□□□ 1.81
FOXN3O00409 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
FOXN3O00409 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
FOXN3O00409 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
FOXN3O00409 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
FOXN3O00409 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
FOXN3O00409 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
FOXN3O00409 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
FOXN3O00409 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.8
FOXN3O00409 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.33■■□□□ 1.8
FOXN3O00409 AC092803.2-201ENST00000564287 1899 ntBASIC26.32■■□□□ 1.8
FOXN3O00409 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.32■■□□□ 1.8
FOXN3O00409 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
FOXN3O00409 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
FOXN3O00409 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
FOXN3O00409 AC145676.1-201ENST00000514988 2004 ntBASIC26.31■■□□□ 1.8
FOXN3O00409 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
FOXN3O00409 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
FOXN3O00409 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.31■■□□□ 1.8
FOXN3O00409 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.31■■□□□ 1.8
FOXN3O00409 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
FOXN3O00409 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
FOXN3O00409 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
FOXN3O00409 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
FOXN3O00409 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.3■■□□□ 1.8
FOXN3O00409 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
FOXN3O00409 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.3■■□□□ 1.8
FOXN3O00409 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
FOXN3O00409 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
FOXN3O00409 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
FOXN3O00409 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC26.3■■□□□ 1.8
FOXN3O00409 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
FOXN3O00409 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
FOXN3O00409 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
FOXN3O00409 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
FOXN3O00409 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
FOXN3O00409 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
FOXN3O00409 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
FOXN3O00409 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.28■■□□□ 1.8
FOXN3O00409 AL359504.2-201ENST00000605506 1601 ntBASIC26.28■■□□□ 1.8
FOXN3O00409 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
FOXN3O00409 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.27■■□□□ 1.8
FOXN3O00409 MIR639-201ENST00000384974 98 ntBASIC26.27■■□□□ 1.8
FOXN3O00409 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.27■■□□□ 1.8
FOXN3O00409 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
FOXN3O00409 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
FOXN3O00409 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
FOXN3O00409 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
FOXN3O00409 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
FOXN3O00409 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
FOXN3O00409 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
FOXN3O00409 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
FOXN3O00409 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
FOXN3O00409 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
FOXN3O00409 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.24■■□□□ 1.79
FOXN3O00409 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
FOXN3O00409 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
FOXN3O00409 DUSP8P4-201ENST00000399538 1761 ntBASIC26.23■■□□□ 1.79
FOXN3O00409 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
FOXN3O00409 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.23■■□□□ 1.79
FOXN3O00409 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
FOXN3O00409 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
FOXN3O00409 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
FOXN3O00409 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.23■■□□□ 1.79
FOXN3O00409 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
FOXN3O00409 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
FOXN3O00409 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
FOXN3O00409 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
FOXN3O00409 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
FOXN3O00409 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
FOXN3O00409 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
FOXN3O00409 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
FOXN3O00409 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
FOXN3O00409 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC26.2■■□□□ 1.78
FOXN3O00409 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.78
FOXN3O00409 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
FOXN3O00409 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC26.19■■□□□ 1.78
FOXN3O00409 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
FOXN3O00409 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
FOXN3O00409 AC126177.7-201ENST00000547904 679 ntBASIC26.19■■□□□ 1.78
FOXN3O00409 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
FOXN3O00409 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.19■■□□□ 1.78
FOXN3O00409 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.18■■□□□ 1.78
FOXN3O00409 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
FOXN3O00409 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.18■■□□□ 1.78
FOXN3O00409 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
FOXN3O00409 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
FOXN3O00409 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
FOXN3O00409 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms