Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
PCDHA1Q9Y5I3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.55■■■□□ 2.16
PCDHA1Q9Y5I3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
PCDHA1Q9Y5I3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.54■■■□□ 2.16
PCDHA1Q9Y5I3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
PCDHA1Q9Y5I3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
PCDHA1Q9Y5I3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PCDHA1Q9Y5I3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PCDHA1Q9Y5I3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
PCDHA1Q9Y5I3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
PCDHA1Q9Y5I3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
PCDHA1Q9Y5I3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.52■■■□□ 2.16
PCDHA1Q9Y5I3 BX255925.1-201ENST00000566954 1854 ntBASIC28.52■■■□□ 2.16
PCDHA1Q9Y5I3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
PCDHA1Q9Y5I3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PCDHA1Q9Y5I3 SMPD5-203ENST00000639008 1464 ntBASIC28.52■■■□□ 2.16
PCDHA1Q9Y5I3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC28.51■■■□□ 2.15
PCDHA1Q9Y5I3 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.51■■■□□ 2.15
PCDHA1Q9Y5I3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
PCDHA1Q9Y5I3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC28.51■■■□□ 2.15
PCDHA1Q9Y5I3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.15
PCDHA1Q9Y5I3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
PCDHA1Q9Y5I3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.5■■■□□ 2.15
PCDHA1Q9Y5I3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC28.5■■■□□ 2.15
PCDHA1Q9Y5I3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
PCDHA1Q9Y5I3 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.5■■■□□ 2.15
PCDHA1Q9Y5I3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.5■■■□□ 2.15
PCDHA1Q9Y5I3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
PCDHA1Q9Y5I3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
PCDHA1Q9Y5I3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC28.49■■■□□ 2.15
PCDHA1Q9Y5I3 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.49■■■□□ 2.15
PCDHA1Q9Y5I3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC28.48■■■□□ 2.15
PCDHA1Q9Y5I3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC28.48■■■□□ 2.15
PCDHA1Q9Y5I3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.48■■■□□ 2.15
PCDHA1Q9Y5I3 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.47■■■□□ 2.15
PCDHA1Q9Y5I3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC28.47■■■□□ 2.15
PCDHA1Q9Y5I3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
PCDHA1Q9Y5I3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
PCDHA1Q9Y5I3 AC025884.2-201ENST00000553429 711 ntBASIC28.47■■■□□ 2.15
PCDHA1Q9Y5I3 NTF6A-201ENST00000591175 560 ntBASIC28.47■■■□□ 2.15
PCDHA1Q9Y5I3 AC007029.1-201ENST00000604183 313 ntBASIC28.47■■■□□ 2.15
PCDHA1Q9Y5I3 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
PCDHA1Q9Y5I3 U85056.1-201ENST00000616429 682 ntBASIC28.46■■■□□ 2.15
PCDHA1Q9Y5I3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC28.45■■■□□ 2.14
PCDHA1Q9Y5I3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
PCDHA1Q9Y5I3 AL359504.2-201ENST00000605506 1601 ntBASIC28.44■■■□□ 2.14
PCDHA1Q9Y5I3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.44■■■□□ 2.14
PCDHA1Q9Y5I3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.44■■■□□ 2.14
PCDHA1Q9Y5I3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC28.43■■■□□ 2.14
PCDHA1Q9Y5I3 AL449106.1-201ENST00000608517 1980 ntBASIC28.43■■■□□ 2.14
PCDHA1Q9Y5I3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
PCDHA1Q9Y5I3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC28.43■■■□□ 2.14
PCDHA1Q9Y5I3 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
PCDHA1Q9Y5I3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
PCDHA1Q9Y5I3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
PCDHA1Q9Y5I3 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
PCDHA1Q9Y5I3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
PCDHA1Q9Y5I3 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
PCDHA1Q9Y5I3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
PCDHA1Q9Y5I3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
PCDHA1Q9Y5I3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
PCDHA1Q9Y5I3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
PCDHA1Q9Y5I3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC28.39■■■□□ 2.14
PCDHA1Q9Y5I3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
PCDHA1Q9Y5I3 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC28.39■■■□□ 2.13
PCDHA1Q9Y5I3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
PCDHA1Q9Y5I3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC28.37■■■□□ 2.13
PCDHA1Q9Y5I3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
PCDHA1Q9Y5I3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC28.37■■■□□ 2.13
PCDHA1Q9Y5I3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
PCDHA1Q9Y5I3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC28.36■■■□□ 2.13
PCDHA1Q9Y5I3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA1Q9Y5I3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA1Q9Y5I3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC28.36■■■□□ 2.13
PCDHA1Q9Y5I3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 RP9P-202ENST00000450133 1212 ntBASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
PCDHA1Q9Y5I3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC28.34■■■□□ 2.13
PCDHA1Q9Y5I3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28.34■■■□□ 2.13
PCDHA1Q9Y5I3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA1Q9Y5I3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA1Q9Y5I3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
PCDHA1Q9Y5I3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA1Q9Y5I3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC28.33■■■□□ 2.13
PCDHA1Q9Y5I3 GFER-205ENST00000569451 517 ntTSL 5 BASIC28.33■■■□□ 2.13
PCDHA1Q9Y5I3 MIR3960-201ENST00000583311 91 ntBASIC28.33■■■□□ 2.13
PCDHA1Q9Y5I3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA1Q9Y5I3 AC009831.1-201ENST00000580420 1582 ntBASIC28.33■■■□□ 2.12
PCDHA1Q9Y5I3 KRT18P60-201ENST00000312876 1297 ntBASIC28.32■■■□□ 2.12
PCDHA1Q9Y5I3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
PCDHA1Q9Y5I3 AC026202.3-201ENST00000600805 1127 ntBASIC28.32■■■□□ 2.12
PCDHA1Q9Y5I3 AC133552.2-201ENST00000619106 1032 ntBASIC28.32■■■□□ 2.12
PCDHA1Q9Y5I3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PCDHA1Q9Y5I3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms