Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
USB1Q9BQ65 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
USB1Q9BQ65 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
USB1Q9BQ65 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USB1Q9BQ65 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.81■■□□□ 1.08
USB1Q9BQ65 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.81■■□□□ 1.08
USB1Q9BQ65 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.81■■□□□ 1.08
USB1Q9BQ65 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USB1Q9BQ65 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USB1Q9BQ65 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
USB1Q9BQ65 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
USB1Q9BQ65 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
USB1Q9BQ65 AL359258.2-201ENST00000564063 1566 ntBASIC21.8■■□□□ 1.08
USB1Q9BQ65 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USB1Q9BQ65 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USB1Q9BQ65 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
USB1Q9BQ65 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
USB1Q9BQ65 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
USB1Q9BQ65 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.79■■□□□ 1.08
USB1Q9BQ65 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.79■■□□□ 1.08
USB1Q9BQ65 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
USB1Q9BQ65 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.79■■□□□ 1.08
USB1Q9BQ65 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.78■■□□□ 1.08
USB1Q9BQ65 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USB1Q9BQ65 NTF6A-201ENST00000591175 560 ntBASIC21.78■■□□□ 1.08
USB1Q9BQ65 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
USB1Q9BQ65 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
USB1Q9BQ65 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USB1Q9BQ65 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USB1Q9BQ65 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USB1Q9BQ65 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USB1Q9BQ65 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
USB1Q9BQ65 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.77■■□□□ 1.08
USB1Q9BQ65 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.77■■□□□ 1.08
USB1Q9BQ65 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USB1Q9BQ65 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USB1Q9BQ65 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
USB1Q9BQ65 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USB1Q9BQ65 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USB1Q9BQ65 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USB1Q9BQ65 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.76■■□□□ 1.07
USB1Q9BQ65 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.76■■□□□ 1.07
USB1Q9BQ65 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USB1Q9BQ65 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
USB1Q9BQ65 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
USB1Q9BQ65 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
USB1Q9BQ65 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USB1Q9BQ65 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
USB1Q9BQ65 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
USB1Q9BQ65 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.75■■□□□ 1.07
USB1Q9BQ65 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USB1Q9BQ65 AC142086.6-201ENST00000621154 1765 ntBASIC21.74■■□□□ 1.07
USB1Q9BQ65 AL157400.5-201ENST00000507624 621 ntBASIC21.74■■□□□ 1.07
USB1Q9BQ65 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.74■■□□□ 1.07
USB1Q9BQ65 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.74■■□□□ 1.07
USB1Q9BQ65 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
USB1Q9BQ65 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
USB1Q9BQ65 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.73■■□□□ 1.07
USB1Q9BQ65 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USB1Q9BQ65 SMPD5-203ENST00000639008 1464 ntBASIC21.72■■□□□ 1.07
USB1Q9BQ65 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.72■■□□□ 1.07
USB1Q9BQ65 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USB1Q9BQ65 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
USB1Q9BQ65 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.72■■□□□ 1.07
USB1Q9BQ65 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.72■■□□□ 1.07
USB1Q9BQ65 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.72■■□□□ 1.07
USB1Q9BQ65 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USB1Q9BQ65 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USB1Q9BQ65 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USB1Q9BQ65 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USB1Q9BQ65 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USB1Q9BQ65 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USB1Q9BQ65 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USB1Q9BQ65 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USB1Q9BQ65 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
USB1Q9BQ65 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USB1Q9BQ65 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USB1Q9BQ65 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USB1Q9BQ65 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
USB1Q9BQ65 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.69■■□□□ 1.06
USB1Q9BQ65 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
USB1Q9BQ65 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.69■■□□□ 1.06
USB1Q9BQ65 AC007029.1-201ENST00000604183 313 ntBASIC21.69■■□□□ 1.06
USB1Q9BQ65 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USB1Q9BQ65 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
USB1Q9BQ65 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USB1Q9BQ65 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USB1Q9BQ65 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USB1Q9BQ65 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.68■■□□□ 1.06
USB1Q9BQ65 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
USB1Q9BQ65 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USB1Q9BQ65 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.67■■□□□ 1.06
USB1Q9BQ65 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.67■■□□□ 1.06
USB1Q9BQ65 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.67■■□□□ 1.06
USB1Q9BQ65 AC025884.2-201ENST00000553429 711 ntBASIC21.67■■□□□ 1.06
USB1Q9BQ65 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.67■■□□□ 1.06
USB1Q9BQ65 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
USB1Q9BQ65 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
USB1Q9BQ65 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
USB1Q9BQ65 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 274.4 ms