Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.71■■□□□ 1.55
LDB1Q86U70 METRNL-202ENST00000570778 967 ntTSL 5 BASIC24.71■■□□□ 1.55
LDB1Q86U70 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
LDB1Q86U70 AP004609.3-201ENST00000610705 1884 ntBASIC24.7■■□□□ 1.55
LDB1Q86U70 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.55
LDB1Q86U70 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
LDB1Q86U70 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC24.7■■□□□ 1.54
LDB1Q86U70 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
LDB1Q86U70 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LDB1Q86U70 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.69■■□□□ 1.54
LDB1Q86U70 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.69■■□□□ 1.54
LDB1Q86U70 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC24.69■■□□□ 1.54
LDB1Q86U70 AC148477.6-201ENST00000623746 465 ntBASIC24.69■■□□□ 1.54
LDB1Q86U70 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LDB1Q86U70 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.68■■□□□ 1.54
LDB1Q86U70 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
LDB1Q86U70 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
LDB1Q86U70 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
LDB1Q86U70 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.68■■□□□ 1.54
LDB1Q86U70 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.67■■□□□ 1.54
LDB1Q86U70 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
LDB1Q86U70 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.67■■□□□ 1.54
LDB1Q86U70 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
LDB1Q86U70 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
LDB1Q86U70 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
LDB1Q86U70 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
LDB1Q86U70 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.66■■□□□ 1.54
LDB1Q86U70 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
LDB1Q86U70 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
LDB1Q86U70 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
LDB1Q86U70 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.65■■□□□ 1.54
LDB1Q86U70 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
LDB1Q86U70 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LDB1Q86U70 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
LDB1Q86U70 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC24.65■■□□□ 1.54
LDB1Q86U70 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LDB1Q86U70 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC24.65■■□□□ 1.54
LDB1Q86U70 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
LDB1Q86U70 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.64■■□□□ 1.54
LDB1Q86U70 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
LDB1Q86U70 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.63■■□□□ 1.53
LDB1Q86U70 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.63■■□□□ 1.53
LDB1Q86U70 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
LDB1Q86U70 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.63■■□□□ 1.53
LDB1Q86U70 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LDB1Q86U70 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
LDB1Q86U70 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LDB1Q86U70 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LDB1Q86U70 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC24.62■■□□□ 1.53
LDB1Q86U70 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LDB1Q86U70 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LDB1Q86U70 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
LDB1Q86U70 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
LDB1Q86U70 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
LDB1Q86U70 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
LDB1Q86U70 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
LDB1Q86U70 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
LDB1Q86U70 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.6■■□□□ 1.53
LDB1Q86U70 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.6■■□□□ 1.53
LDB1Q86U70 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
LDB1Q86U70 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
LDB1Q86U70 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC24.59■■□□□ 1.53
LDB1Q86U70 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
LDB1Q86U70 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.58■■□□□ 1.53
LDB1Q86U70 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.58■■□□□ 1.53
LDB1Q86U70 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC24.58■■□□□ 1.53
LDB1Q86U70 MED25-210ENST00000612854 801 ntTSL 5 BASIC24.58■■□□□ 1.53
LDB1Q86U70 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
LDB1Q86U70 MED25-214ENST00000622402 642 ntTSL 5 BASIC24.58■■□□□ 1.53
LDB1Q86U70 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
LDB1Q86U70 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
LDB1Q86U70 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
LDB1Q86U70 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC24.58■■□□□ 1.52
LDB1Q86U70 AC142472.1-201ENST00000612013 1741 ntBASIC24.58■■□□□ 1.52
LDB1Q86U70 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
LDB1Q86U70 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
LDB1Q86U70 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
LDB1Q86U70 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
LDB1Q86U70 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
LDB1Q86U70 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.57■■□□□ 1.52
LDB1Q86U70 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
LDB1Q86U70 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
LDB1Q86U70 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
LDB1Q86U70 AL359258.2-201ENST00000564063 1566 ntBASIC24.55■■□□□ 1.52
LDB1Q86U70 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC24.55■■□□□ 1.52
LDB1Q86U70 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
LDB1Q86U70 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC24.54■■□□□ 1.52
LDB1Q86U70 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
LDB1Q86U70 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.54■■□□□ 1.52
LDB1Q86U70 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
LDB1Q86U70 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
LDB1Q86U70 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC24.54■■□□□ 1.52
LDB1Q86U70 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.54■■□□□ 1.52
LDB1Q86U70 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
LDB1Q86U70 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
LDB1Q86U70 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
LDB1Q86U70 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.53■■□□□ 1.52
LDB1Q86U70 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC24.53■■□□□ 1.52
LDB1Q86U70 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
LDB1Q86U70 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms