Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LINC00477Q96M19 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LINC00477Q96M19 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LINC00477Q96M19 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC18.57■□□□□ 0.56
LINC00477Q96M19 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LINC00477Q96M19 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LINC00477Q96M19 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC18.57■□□□□ 0.56
LINC00477Q96M19 AL162393.1-201ENST00000437852 946 ntBASIC18.57■□□□□ 0.56
LINC00477Q96M19 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LINC00477Q96M19 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LINC00477Q96M19 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC18.57■□□□□ 0.56
LINC00477Q96M19 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LINC00477Q96M19 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.57■□□□□ 0.56
LINC00477Q96M19 AC091060.1-201ENST00000623524 1766 ntBASIC18.56■□□□□ 0.56
LINC00477Q96M19 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.56■□□□□ 0.56
LINC00477Q96M19 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LINC00477Q96M19 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LINC00477Q96M19 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LINC00477Q96M19 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LINC00477Q96M19 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LINC00477Q96M19 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LINC00477Q96M19 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
LINC00477Q96M19 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC18.54■□□□□ 0.56
LINC00477Q96M19 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
LINC00477Q96M19 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.53■□□□□ 0.56
LINC00477Q96M19 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LINC00477Q96M19 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LINC00477Q96M19 AL449106.1-201ENST00000608517 1980 ntBASIC18.53■□□□□ 0.56
LINC00477Q96M19 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LINC00477Q96M19 DUX4L29-201ENST00000425409 679 ntBASIC18.52■□□□□ 0.56
LINC00477Q96M19 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC18.52■□□□□ 0.55
LINC00477Q96M19 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LINC00477Q96M19 AP004609.3-201ENST00000610705 1884 ntBASIC18.52■□□□□ 0.55
LINC00477Q96M19 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
LINC00477Q96M19 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LINC00477Q96M19 AC145676.1-201ENST00000514988 2004 ntBASIC18.51■□□□□ 0.55
LINC00477Q96M19 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LINC00477Q96M19 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC18.51■□□□□ 0.55
LINC00477Q96M19 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC18.51■□□□□ 0.55
LINC00477Q96M19 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LINC00477Q96M19 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC18.51■□□□□ 0.55
LINC00477Q96M19 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LINC00477Q96M19 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
LINC00477Q96M19 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.51■□□□□ 0.55
LINC00477Q96M19 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC18.5■□□□□ 0.55
LINC00477Q96M19 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC18.5■□□□□ 0.55
LINC00477Q96M19 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LINC00477Q96M19 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LINC00477Q96M19 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC18.5■□□□□ 0.55
LINC00477Q96M19 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LINC00477Q96M19 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LINC00477Q96M19 AC021231.2-201ENST00000594613 730 ntBASIC18.49■□□□□ 0.55
LINC00477Q96M19 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
LINC00477Q96M19 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LINC00477Q96M19 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC18.49■□□□□ 0.55
LINC00477Q96M19 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LINC00477Q96M19 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC18.48■□□□□ 0.55
LINC00477Q96M19 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LINC00477Q96M19 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
LINC00477Q96M19 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC18.48■□□□□ 0.55
LINC00477Q96M19 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LINC00477Q96M19 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LINC00477Q96M19 WHAMMP3-201ENST00000611636 1609 ntBASIC18.47■□□□□ 0.55
LINC00477Q96M19 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LINC00477Q96M19 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LINC00477Q96M19 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
LINC00477Q96M19 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LINC00477Q96M19 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LINC00477Q96M19 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LINC00477Q96M19 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
LINC00477Q96M19 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.46■□□□□ 0.55
LINC00477Q96M19 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.46■□□□□ 0.55
LINC00477Q96M19 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LINC00477Q96M19 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC18.46■□□□□ 0.55
LINC00477Q96M19 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LINC00477Q96M19 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC18.45■□□□□ 0.54
LINC00477Q96M19 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LINC00477Q96M19 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LINC00477Q96M19 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LINC00477Q96M19 AC142472.1-201ENST00000612013 1741 ntBASIC18.45■□□□□ 0.54
LINC00477Q96M19 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
LINC00477Q96M19 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LINC00477Q96M19 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LINC00477Q96M19 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC18.44■□□□□ 0.54
LINC00477Q96M19 RPS2-210ENST00000530225 765 ntTSL 2 BASIC18.44■□□□□ 0.54
LINC00477Q96M19 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC18.43■□□□□ 0.54
LINC00477Q96M19 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LINC00477Q96M19 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LINC00477Q96M19 AC092803.2-201ENST00000564287 1899 ntBASIC18.43■□□□□ 0.54
LINC00477Q96M19 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LINC00477Q96M19 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LINC00477Q96M19 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC18.42■□□□□ 0.54
LINC00477Q96M19 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LINC00477Q96M19 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LINC00477Q96M19 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.42■□□□□ 0.54
LINC00477Q96M19 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC18.42■□□□□ 0.54
LINC00477Q96M19 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LINC00477Q96M19 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LINC00477Q96M19 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LINC00477Q96M19 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms