Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RETREG3Q86VR2 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.75■■□□□ 1.39
RETREG3Q86VR2 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.74■■□□□ 1.39
RETREG3Q86VR2 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RETREG3Q86VR2 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RETREG3Q86VR2 AC108673.1-201ENST00000510422 1159 ntBASIC23.74■■□□□ 1.39
RETREG3Q86VR2 AP004609.3-201ENST00000610705 1884 ntBASIC23.74■■□□□ 1.39
RETREG3Q86VR2 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RETREG3Q86VR2 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RETREG3Q86VR2 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RETREG3Q86VR2 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RETREG3Q86VR2 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RETREG3Q86VR2 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RETREG3Q86VR2 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.71■■□□□ 1.39
RETREG3Q86VR2 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
RETREG3Q86VR2 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RETREG3Q86VR2 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RETREG3Q86VR2 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RETREG3Q86VR2 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
RETREG3Q86VR2 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
RETREG3Q86VR2 SUZ12P1-203ENST00000578195 985 ntBASIC23.68■■□□□ 1.38
RETREG3Q86VR2 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.68■■□□□ 1.38
RETREG3Q86VR2 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
RETREG3Q86VR2 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RETREG3Q86VR2 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
RETREG3Q86VR2 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RETREG3Q86VR2 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
RETREG3Q86VR2 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RETREG3Q86VR2 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RETREG3Q86VR2 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.64■■□□□ 1.38
RETREG3Q86VR2 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RETREG3Q86VR2 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RETREG3Q86VR2 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.64■■□□□ 1.37
RETREG3Q86VR2 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.63■■□□□ 1.37
RETREG3Q86VR2 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RETREG3Q86VR2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RETREG3Q86VR2 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 DUX4L28-201ENST00000623687 678 ntBASIC23.62■■□□□ 1.37
RETREG3Q86VR2 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.62■■□□□ 1.37
RETREG3Q86VR2 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.61■■□□□ 1.37
RETREG3Q86VR2 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.61■■□□□ 1.37
RETREG3Q86VR2 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.61■■□□□ 1.37
RETREG3Q86VR2 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RETREG3Q86VR2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RETREG3Q86VR2 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.59■■□□□ 1.37
RETREG3Q86VR2 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RETREG3Q86VR2 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.59■■□□□ 1.37
RETREG3Q86VR2 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.59■■□□□ 1.37
RETREG3Q86VR2 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RETREG3Q86VR2 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RETREG3Q86VR2 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.36
RETREG3Q86VR2 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 AC142472.1-201ENST00000612013 1741 ntBASIC23.57■■□□□ 1.36
RETREG3Q86VR2 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
RETREG3Q86VR2 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RETREG3Q86VR2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.56■■□□□ 1.36
RETREG3Q86VR2 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
RETREG3Q86VR2 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
RETREG3Q86VR2 AC093323.1-202ENST00000635031 2045 ntBASIC23.55■■□□□ 1.36
RETREG3Q86VR2 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RETREG3Q86VR2 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.55■■□□□ 1.36
RETREG3Q86VR2 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
RETREG3Q86VR2 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.54■■□□□ 1.36
RETREG3Q86VR2 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
RETREG3Q86VR2 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RETREG3Q86VR2 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.53■■□□□ 1.36
RETREG3Q86VR2 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.53■■□□□ 1.36
RETREG3Q86VR2 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RETREG3Q86VR2 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RETREG3Q86VR2 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms