Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
COL5A3P25940 AC093536.1-201ENST00000569153 554 ntBASIC32.26■■■□□ 2.75
COL5A3P25940 RAP2CP1-202ENST00000605179 643 ntBASIC32.26■■■□□ 2.75
COL5A3P25940 ST7-AS1-201ENST00000456775 1889 ntBASIC32.25■■■□□ 2.75
COL5A3P25940 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC32.25■■■□□ 2.75
COL5A3P25940 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL5A3P25940 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL5A3P25940 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
COL5A3P25940 SPCS2P3-201ENST00000500401 656 ntBASIC32.24■■■□□ 2.75
COL5A3P25940 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC32.24■■■□□ 2.75
COL5A3P25940 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
COL5A3P25940 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
COL5A3P25940 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC32.23■■■□□ 2.75
COL5A3P25940 TRIR-205ENST00000592273 783 ntTSL 3 BASIC32.23■■■□□ 2.75
COL5A3P25940 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC32.23■■■□□ 2.75
COL5A3P25940 AC026202.3-201ENST00000600805 1127 ntBASIC32.23■■■□□ 2.75
COL5A3P25940 AL035685.1-201ENST00000636663 812 ntBASIC32.23■■■□□ 2.75
COL5A3P25940 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC32.22■■■□□ 2.75
COL5A3P25940 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC32.22■■■□□ 2.75
COL5A3P25940 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
COL5A3P25940 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
COL5A3P25940 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL5A3P25940 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL5A3P25940 SMPD5-203ENST00000639008 1464 ntBASIC32.21■■■□□ 2.75
COL5A3P25940 DUX4L18-201ENST00000553347 1267 ntBASIC32.2■■■□□ 2.75
COL5A3P25940 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
COL5A3P25940 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC32.19■■■□□ 2.74
COL5A3P25940 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC32.19■■■□□ 2.74
COL5A3P25940 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL5A3P25940 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL5A3P25940 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC32.17■■■□□ 2.74
COL5A3P25940 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC32.17■■■□□ 2.74
COL5A3P25940 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC32.16■■■□□ 2.74
COL5A3P25940 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL5A3P25940 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
COL5A3P25940 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
COL5A3P25940 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC32.16■■■□□ 2.74
COL5A3P25940 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC32.16■■■□□ 2.74
COL5A3P25940 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC32.16■■■□□ 2.74
COL5A3P25940 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC32.15■■■□□ 2.74
COL5A3P25940 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC32.15■■■□□ 2.74
COL5A3P25940 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC32.15■■■□□ 2.74
COL5A3P25940 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC32.14■■■□□ 2.74
COL5A3P25940 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC32.14■■■□□ 2.74
COL5A3P25940 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC32.14■■■□□ 2.74
COL5A3P25940 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
COL5A3P25940 AL359258.2-201ENST00000564063 1566 ntBASIC32.14■■■□□ 2.74
COL5A3P25940 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL5A3P25940 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
COL5A3P25940 BEX3-202ENST00000372634 753 ntTSL 2 BASIC32.12■■■□□ 2.73
COL5A3P25940 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC32.12■■■□□ 2.73
COL5A3P25940 RP9P-202ENST00000450133 1212 ntBASIC32.12■■■□□ 2.73
COL5A3P25940 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC32.12■■■□□ 2.73
COL5A3P25940 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC32.11■■■□□ 2.73
COL5A3P25940 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC32.11■■■□□ 2.73
COL5A3P25940 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC32.11■■■□□ 2.73
COL5A3P25940 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC32.1■■■□□ 2.73
COL5A3P25940 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC32.1■■■□□ 2.73
COL5A3P25940 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC32.1■■■□□ 2.73
COL5A3P25940 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC32.08■■■□□ 2.73
COL5A3P25940 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC32.07■■■□□ 2.72
COL5A3P25940 AC009299.2-201ENST00000482477 511 ntBASIC32.07■■■□□ 2.72
COL5A3P25940 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC32.07■■■□□ 2.72
COL5A3P25940 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
COL5A3P25940 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL5A3P25940 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC32.06■■■□□ 2.72
COL5A3P25940 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC32.06■■■□□ 2.72
COL5A3P25940 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC32.06■■■□□ 2.72
COL5A3P25940 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC32.05■■■□□ 2.72
COL5A3P25940 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC32.05■■■□□ 2.72
COL5A3P25940 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC32.05■■■□□ 2.72
COL5A3P25940 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL5A3P25940 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC32.05■■■□□ 2.72
COL5A3P25940 PFN2-211ENST00000489155 636 ntTSL 4 BASIC32.04■■■□□ 2.72
COL5A3P25940 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
COL5A3P25940 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC32.03■■■□□ 2.72
COL5A3P25940 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC32.02■■■□□ 2.72
COL5A3P25940 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
COL5A3P25940 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
COL5A3P25940 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
COL5A3P25940 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
COL5A3P25940 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
COL5A3P25940 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
COL5A3P25940 PVT1_1.1-201ENST00000615125 194 ntBASIC32■■■□□ 2.71
COL5A3P25940 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.99■■■□□ 2.71
COL5A3P25940 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL5A3P25940 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.99■■■□□ 2.71
COL5A3P25940 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL5A3P25940 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.97■■■□□ 2.71
COL5A3P25940 AC010980.1-201ENST00000587192 1142 ntBASIC31.97■■■□□ 2.71
COL5A3P25940 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL5A3P25940 MIR3960-201ENST00000583311 91 ntBASIC31.97■■■□□ 2.71
COL5A3P25940 MIR6765-201ENST00000614092 87 ntBASIC31.97■■■□□ 2.71
COL5A3P25940 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
COL5A3P25940 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
COL5A3P25940 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
COL5A3P25940 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC31.96■■■□□ 2.71
COL5A3P25940 KRT8P33-201ENST00000508125 1423 ntBASIC31.96■■■□□ 2.71
COL5A3P25940 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
COL5A3P25940 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms