Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS13CQ709C8 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS13CQ709C8 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
VPS13CQ709C8 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS13CQ709C8 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS13CQ709C8 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.36■■□□□ 1.01
VPS13CQ709C8 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS13CQ709C8 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13CQ709C8 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13CQ709C8 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS13CQ709C8 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13CQ709C8 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.34■■□□□ 1.01
VPS13CQ709C8 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS13CQ709C8 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.33■■□□□ 1.01
VPS13CQ709C8 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS13CQ709C8 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS13CQ709C8 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS13CQ709C8 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS13CQ709C8 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS13CQ709C8 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.33■■□□□ 1
VPS13CQ709C8 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13CQ709C8 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS13CQ709C8 DUX4L18-201ENST00000553347 1267 ntBASIC21.32■■□□□ 1
VPS13CQ709C8 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS13CQ709C8 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.32■■□□□ 1
VPS13CQ709C8 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS13CQ709C8 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
VPS13CQ709C8 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS13CQ709C8 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
VPS13CQ709C8 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS13CQ709C8 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13CQ709C8 AC100797.4-201ENST00000631653 1827 ntBASIC21.3■■□□□ 1
VPS13CQ709C8 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS13CQ709C8 AL592293.1-201ENST00000502889 1188 ntBASIC21.3■■□□□ 1
VPS13CQ709C8 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS13CQ709C8 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.29■■□□□ 1
VPS13CQ709C8 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS13CQ709C8 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS13CQ709C8 AL135925.1-201ENST00000605920 1701 ntBASIC21.28■■□□□ 1
VPS13CQ709C8 DUX4L9-201ENST00000449051 1259 ntBASIC21.28■■□□□ 1
VPS13CQ709C8 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS13CQ709C8 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
VPS13CQ709C8 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VPS13CQ709C8 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS13CQ709C8 KRT8P33-201ENST00000508125 1423 ntBASIC21.27■■□□□ 1
VPS13CQ709C8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
VPS13CQ709C8 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS13CQ709C8 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13CQ709C8 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13CQ709C8 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
VPS13CQ709C8 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS13CQ709C8 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13CQ709C8 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13CQ709C8 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13CQ709C8 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13CQ709C8 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.25■□□□□ 0.99
VPS13CQ709C8 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13CQ709C8 AC009299.2-201ENST00000482477 511 ntBASIC21.24■□□□□ 0.99
VPS13CQ709C8 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
VPS13CQ709C8 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13CQ709C8 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13CQ709C8 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13CQ709C8 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS13CQ709C8 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13CQ709C8 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.23■□□□□ 0.99
VPS13CQ709C8 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13CQ709C8 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
VPS13CQ709C8 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS13CQ709C8 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13CQ709C8 THA1P-201ENST00000590384 1145 ntBASIC21.22■□□□□ 0.99
VPS13CQ709C8 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13CQ709C8 AC009831.1-201ENST00000580420 1582 ntBASIC21.21■□□□□ 0.99
VPS13CQ709C8 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
VPS13CQ709C8 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13CQ709C8 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.99
VPS13CQ709C8 ECEL1P2-201ENST00000461596 1295 ntBASIC21.2■□□□□ 0.98
VPS13CQ709C8 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
VPS13CQ709C8 AC133552.2-201ENST00000619106 1032 ntBASIC21.2■□□□□ 0.98
VPS13CQ709C8 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
VPS13CQ709C8 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS13CQ709C8 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13CQ709C8 AC025884.2-201ENST00000553429 711 ntBASIC21.2■□□□□ 0.98
VPS13CQ709C8 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS13CQ709C8 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13CQ709C8 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.2■□□□□ 0.98
VPS13CQ709C8 AC131212.1-201ENST00000613771 668 ntBASIC21.2■□□□□ 0.98
VPS13CQ709C8 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.19■□□□□ 0.98
VPS13CQ709C8 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS13CQ709C8 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13CQ709C8 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13CQ709C8 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13CQ709C8 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS13CQ709C8 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS13CQ709C8 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13CQ709C8 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS13CQ709C8 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS13CQ709C8 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS13CQ709C8 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS13CQ709C8 RP9P-202ENST00000450133 1212 ntBASIC21.17■□□□□ 0.98
VPS13CQ709C8 AC026202.3-201ENST00000600805 1127 ntBASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms