Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HLA-DMBP28068 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HLA-DMBP28068 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.08■□□□□ 0.64
HLA-DMBP28068 LINC00273-201ENST00000539813 1452 ntBASIC19.08■□□□□ 0.64
HLA-DMBP28068 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.08■□□□□ 0.64
HLA-DMBP28068 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DMBP28068 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DMBP28068 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
HLA-DMBP28068 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
HLA-DMBP28068 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HLA-DMBP28068 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DMBP28068 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DMBP28068 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DMBP28068 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DMBP28068 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HLA-DMBP28068 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HLA-DMBP28068 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DMBP28068 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DMBP28068 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DMBP28068 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DMBP28068 BOD1-206ENST00000480951 814 ntTSL 2 BASIC19.05■□□□□ 0.64
HLA-DMBP28068 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DMBP28068 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.05■□□□□ 0.64
HLA-DMBP28068 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.04■□□□□ 0.64
HLA-DMBP28068 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.04■□□□□ 0.64
HLA-DMBP28068 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HLA-DMBP28068 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.04■□□□□ 0.64
HLA-DMBP28068 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HLA-DMBP28068 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.04■□□□□ 0.64
HLA-DMBP28068 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HLA-DMBP28068 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HLA-DMBP28068 AC018358.1-201ENST00000631079 1402 ntBASIC19.03■□□□□ 0.64
HLA-DMBP28068 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HLA-DMBP28068 MLEC-202ENST00000412616 841 ntTSL 3 BASIC19.03■□□□□ 0.64
HLA-DMBP28068 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.02■□□□□ 0.64
HLA-DMBP28068 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HLA-DMBP28068 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
HLA-DMBP28068 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HLA-DMBP28068 ABHD17AP4-201ENST00000411545 909 ntBASIC19.02■□□□□ 0.64
HLA-DMBP28068 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
HLA-DMBP28068 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HLA-DMBP28068 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HLA-DMBP28068 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.01■□□□□ 0.63
HLA-DMBP28068 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HLA-DMBP28068 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.01■□□□□ 0.63
HLA-DMBP28068 CIB2-204ENST00000557846 934 ntTSL 3 BASIC19.01■□□□□ 0.63
HLA-DMBP28068 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HLA-DMBP28068 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HLA-DMBP28068 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HLA-DMBP28068 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC19■□□□□ 0.63
HLA-DMBP28068 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC19■□□□□ 0.63
HLA-DMBP28068 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HLA-DMBP28068 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DMBP28068 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DMBP28068 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DMBP28068 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DMBP28068 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.98■□□□□ 0.63
HLA-DMBP28068 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DMBP28068 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
HLA-DMBP28068 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DMBP28068 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HLA-DMBP28068 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
HLA-DMBP28068 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
HLA-DMBP28068 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DMBP28068 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC18.97■□□□□ 0.63
HLA-DMBP28068 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DMBP28068 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HLA-DMBP28068 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
HLA-DMBP28068 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC18.97■□□□□ 0.63
HLA-DMBP28068 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.96■□□□□ 0.63
HLA-DMBP28068 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC18.96■□□□□ 0.63
HLA-DMBP28068 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC18.96■□□□□ 0.63
HLA-DMBP28068 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC18.96■□□□□ 0.63
HLA-DMBP28068 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC18.96■□□□□ 0.63
HLA-DMBP28068 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
HLA-DMBP28068 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HLA-DMBP28068 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DMBP28068 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DMBP28068 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DMBP28068 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HLA-DMBP28068 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DMBP28068 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
HLA-DMBP28068 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HLA-DMBP28068 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HLA-DMBP28068 MIR7108-201ENST00000614319 87 ntBASIC18.94■□□□□ 0.62
HLA-DMBP28068 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HLA-DMBP28068 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC18.93■□□□□ 0.62
HLA-DMBP28068 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DMBP28068 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DMBP28068 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DMBP28068 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DMBP28068 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HLA-DMBP28068 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DMBP28068 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DMBP28068 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HLA-DMBP28068 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HLA-DMBP28068 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC18.91■□□□□ 0.62
HLA-DMBP28068 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DMBP28068 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HLA-DMBP28068 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms