Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL1P09341 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CXCL1P09341 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.48■□□□□ 0.71
CXCL1P09341 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 DYNLL1-208ENST00000550178 581 ntBASIC19.48■□□□□ 0.71
CXCL1P09341 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL1P09341 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL1P09341 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL1P09341 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.47■□□□□ 0.71
CXCL1P09341 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL1P09341 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL1P09341 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CXCL1P09341 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL1P09341 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL1P09341 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.46■□□□□ 0.71
CXCL1P09341 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL1P09341 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CXCL1P09341 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL1P09341 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL1P09341 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CXCL1P09341 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL1P09341 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC19.44■□□□□ 0.7
CXCL1P09341 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL1P09341 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CXCL1P09341 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL1P09341 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL1P09341 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL1P09341 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CXCL1P09341 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL1P09341 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CXCL1P09341 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL1P09341 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.42■□□□□ 0.7
CXCL1P09341 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL1P09341 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL1P09341 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL1P09341 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.41■□□□□ 0.7
CXCL1P09341 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL1P09341 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CXCL1P09341 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CXCL1P09341 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL1P09341 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CXCL1P09341 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
CXCL1P09341 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CXCL1P09341 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL1P09341 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CXCL1P09341 AC012676.1-201ENST00000574705 1949 ntBASIC19.39■□□□□ 0.7
CXCL1P09341 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CXCL1P09341 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL1P09341 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL1P09341 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.39■□□□□ 0.69
CXCL1P09341 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL1P09341 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC19.38■□□□□ 0.69
CXCL1P09341 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CXCL1P09341 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CXCL1P09341 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CXCL1P09341 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CXCL1P09341 AL031258.1-201ENST00000623562 325 ntBASIC19.37■□□□□ 0.69
CXCL1P09341 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CXCL1P09341 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CXCL1P09341 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CXCL1P09341 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.36■□□□□ 0.69
CXCL1P09341 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CXCL1P09341 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CXCL1P09341 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CXCL1P09341 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.35■□□□□ 0.69
CXCL1P09341 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC19.35■□□□□ 0.69
CXCL1P09341 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.35■□□□□ 0.69
CXCL1P09341 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.35■□□□□ 0.69
CXCL1P09341 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CXCL1P09341 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.34■□□□□ 0.69
CXCL1P09341 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL1P09341 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.34■□□□□ 0.69
CXCL1P09341 CLDN5-201ENST00000403084 2357 ntBASIC19.34■□□□□ 0.69
CXCL1P09341 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.34■□□□□ 0.69
CXCL1P09341 LINC00543-201ENST00000567234 1845 ntBASIC19.34■□□□□ 0.69
CXCL1P09341 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.33■□□□□ 0.68
CXCL1P09341 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.33■□□□□ 0.68
CXCL1P09341 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL1P09341 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL1P09341 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.33■□□□□ 0.68
CXCL1P09341 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL1P09341 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.32■□□□□ 0.68
CXCL1P09341 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL1P09341 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL1P09341 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL1P09341 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL1P09341 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL1P09341 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL1P09341 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms