Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.15■■□□□ 1.78
CCDC188H7C350 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC26.15■■□□□ 1.78
CCDC188H7C350 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CCDC188H7C350 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC26.14■■□□□ 1.78
CCDC188H7C350 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.14■■□□□ 1.78
CCDC188H7C350 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
CCDC188H7C350 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.14■■□□□ 1.77
CCDC188H7C350 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.77
CCDC188H7C350 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.14■■□□□ 1.77
CCDC188H7C350 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.13■■□□□ 1.77
CCDC188H7C350 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CCDC188H7C350 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.13■■□□□ 1.77
CCDC188H7C350 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.13■■□□□ 1.77
CCDC188H7C350 AC136428.2-201ENST00000563187 214 ntBASIC26.12■■□□□ 1.77
CCDC188H7C350 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
CCDC188H7C350 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.11■■□□□ 1.77
CCDC188H7C350 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.11■■□□□ 1.77
CCDC188H7C350 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CCDC188H7C350 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CCDC188H7C350 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.1■■□□□ 1.77
CCDC188H7C350 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
CCDC188H7C350 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC188H7C350 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CCDC188H7C350 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.09■■□□□ 1.77
CCDC188H7C350 WHAMMP2-203ENST00000563942 1603 ntBASIC26.09■■□□□ 1.77
CCDC188H7C350 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CCDC188H7C350 MIR762-201ENST00000390236 83 ntBASIC26.08■■□□□ 1.77
CCDC188H7C350 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
CCDC188H7C350 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.08■■□□□ 1.77
CCDC188H7C350 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
CCDC188H7C350 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC188H7C350 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC188H7C350 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.07■■□□□ 1.76
CCDC188H7C350 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.07■■□□□ 1.76
CCDC188H7C350 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC188H7C350 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC188H7C350 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC188H7C350 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
CCDC188H7C350 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC188H7C350 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC188H7C350 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC188H7C350 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC188H7C350 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC26.06■■□□□ 1.76
CCDC188H7C350 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
CCDC188H7C350 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC188H7C350 AC020928.2-201ENST00000588717 2197 ntBASIC26.06■■□□□ 1.76
CCDC188H7C350 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.05■■□□□ 1.76
CCDC188H7C350 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC188H7C350 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.05■■□□□ 1.76
CCDC188H7C350 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.05■■□□□ 1.76
CCDC188H7C350 AC097358.2-201ENST00000607541 1159 ntBASIC26.05■■□□□ 1.76
CCDC188H7C350 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
CCDC188H7C350 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC188H7C350 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC188H7C350 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
CCDC188H7C350 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC188H7C350 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
CCDC188H7C350 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC188H7C350 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.04■■□□□ 1.76
CCDC188H7C350 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC188H7C350 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC188H7C350 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC188H7C350 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC188H7C350 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.03■■□□□ 1.76
CCDC188H7C350 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC188H7C350 DUSP8P4-201ENST00000399538 1761 ntBASIC26.02■■□□□ 1.76
CCDC188H7C350 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC188H7C350 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC188H7C350 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
CCDC188H7C350 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC188H7C350 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC188H7C350 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26■■□□□ 1.75
CCDC188H7C350 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC188H7C350 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC188H7C350 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC188H7C350 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26■■□□□ 1.75
CCDC188H7C350 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26■■□□□ 1.75
CCDC188H7C350 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
CCDC188H7C350 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC188H7C350 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC188H7C350 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
CCDC188H7C350 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.99■■□□□ 1.75
CCDC188H7C350 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.99■■□□□ 1.75
CCDC188H7C350 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.98■■□□□ 1.75
CCDC188H7C350 LINC00273-201ENST00000539813 1452 ntBASIC25.98■■□□□ 1.75
CCDC188H7C350 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC188H7C350 AC092803.2-201ENST00000564287 1899 ntBASIC25.98■■□□□ 1.75
CCDC188H7C350 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.98■■□□□ 1.75
CCDC188H7C350 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC188H7C350 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
CCDC188H7C350 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC188H7C350 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC188H7C350 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC25.97■■□□□ 1.75
CCDC188H7C350 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.96■■□□□ 1.75
CCDC188H7C350 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC188H7C350 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC188H7C350 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC188H7C350 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC188H7C350 AC108673.1-201ENST00000510422 1159 ntBASIC25.94■■□□□ 1.74
CCDC188H7C350 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms