Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV41A0A0B4J266 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV41A0A0B4J266 MIR639-201ENST00000384974 98 ntBASIC19.86■□□□□ 0.77
TRAV41A0A0B4J266 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.86■□□□□ 0.77
TRAV41A0A0B4J266 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.86■□□□□ 0.77
TRAV41A0A0B4J266 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.86■□□□□ 0.77
TRAV41A0A0B4J266 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV41A0A0B4J266 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
TRAV41A0A0B4J266 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV41A0A0B4J266 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.85■□□□□ 0.77
TRAV41A0A0B4J266 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
TRAV41A0A0B4J266 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.85■□□□□ 0.77
TRAV41A0A0B4J266 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
TRAV41A0A0B4J266 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
TRAV41A0A0B4J266 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
TRAV41A0A0B4J266 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV41A0A0B4J266 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV41A0A0B4J266 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV41A0A0B4J266 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV41A0A0B4J266 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV41A0A0B4J266 AC142086.6-201ENST00000621154 1765 ntBASIC19.83■□□□□ 0.77
TRAV41A0A0B4J266 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV41A0A0B4J266 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
TRAV41A0A0B4J266 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
TRAV41A0A0B4J266 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV41A0A0B4J266 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV41A0A0B4J266 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV41A0A0B4J266 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV41A0A0B4J266 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC19.81■□□□□ 0.76
TRAV41A0A0B4J266 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV41A0A0B4J266 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.81■□□□□ 0.76
TRAV41A0A0B4J266 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV41A0A0B4J266 AC018358.1-201ENST00000631079 1402 ntBASIC19.8■□□□□ 0.76
TRAV41A0A0B4J266 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
TRAV41A0A0B4J266 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
TRAV41A0A0B4J266 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAV41A0A0B4J266 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV41A0A0B4J266 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
TRAV41A0A0B4J266 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAV41A0A0B4J266 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV41A0A0B4J266 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
TRAV41A0A0B4J266 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV41A0A0B4J266 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.78■□□□□ 0.76
TRAV41A0A0B4J266 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV41A0A0B4J266 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
TRAV41A0A0B4J266 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAV41A0A0B4J266 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV41A0A0B4J266 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
TRAV41A0A0B4J266 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV41A0A0B4J266 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV41A0A0B4J266 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
TRAV41A0A0B4J266 CHST11-203ENST00000547956 936 ntTSL 2 BASIC19.76■□□□□ 0.75
TRAV41A0A0B4J266 AC148477.6-201ENST00000623746 465 ntBASIC19.76■□□□□ 0.75
TRAV41A0A0B4J266 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.76■□□□□ 0.75
TRAV41A0A0B4J266 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV41A0A0B4J266 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV41A0A0B4J266 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV41A0A0B4J266 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV41A0A0B4J266 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
TRAV41A0A0B4J266 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.74■□□□□ 0.75
TRAV41A0A0B4J266 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
TRAV41A0A0B4J266 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.74■□□□□ 0.75
TRAV41A0A0B4J266 MIR4449-201ENST00000578365 66 ntBASIC19.74■□□□□ 0.75
TRAV41A0A0B4J266 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV41A0A0B4J266 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
TRAV41A0A0B4J266 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV41A0A0B4J266 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV41A0A0B4J266 MIR219A2-201ENST00000608502 1504 ntBASIC19.73■□□□□ 0.75
TRAV41A0A0B4J266 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV41A0A0B4J266 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
TRAV41A0A0B4J266 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV41A0A0B4J266 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV41A0A0B4J266 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
TRAV41A0A0B4J266 LINC01003-201ENST00000564834 1764 ntBASIC19.71■□□□□ 0.75
TRAV41A0A0B4J266 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
TRAV41A0A0B4J266 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
TRAV41A0A0B4J266 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 BX255925.1-201ENST00000566954 1854 ntBASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRAV41A0A0B4J266 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAV41A0A0B4J266 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV41A0A0B4J266 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV41A0A0B4J266 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV41A0A0B4J266 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV41A0A0B4J266 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV41A0A0B4J266 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV41A0A0B4J266 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV41A0A0B4J266 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.68■□□□□ 0.74
TRAV41A0A0B4J266 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.68■□□□□ 0.74
TRAV41A0A0B4J266 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.68■□□□□ 0.74
TRAV41A0A0B4J266 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC19.68■□□□□ 0.74
TRAV41A0A0B4J266 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms