RNA–Protein interactions for RNA: YPR013C

CMR3, Transcript of Putative zinc finger protein, yeast

Gene CMR3, Length 954 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CMR3	YPR013C	MTC1	P47018	478 aa	Known RBP	12.26	□□□□□ -0.45
CMR3	YPR013C	FAP1	P53971	965 aa		11.84	□□□□□ -0.51
CMR3	YPR013C	DRS1	P32892	752 aa	Known RBP	11.39	□□□□□ -0.59
CMR3	YPR013C	PRY3	P47033	881 aa		11.22	□□□□□ -0.61
CMR3	YPR013C	PRI1	P10363	409 aa		10.56	□□□□□ -0.72
CMR3	YPR013C	YCK3	P39962	524 aa		10.51	□□□□□ -0.73
CMR3	YPR013C	AAD16	Q02895	342 aa		10.49	□□□□□ -0.73
CMR3	YPR013C	HAA1	Q12753	694 aa	Known RBP	10.37	□□□□□ -0.75
CMR3	YPR013C	BFR2	Q06631	534 aa	Known RBP	10.16	□□□□□ -0.78
CMR3	YPR013C	ISW2	Q08773	1120 aa		10.12	□□□□□ -0.79
CMR3	YPR013C	RPG1	P38249	964 aa	Known RBP	10.1	□□□□□ -0.79
CMR3	YPR013C	TFA1	P36100	482 aa		10.04	□□□□□ -0.8
CMR3	YPR013C	TSR3	Q12094	313 aa	Known RBP	9.93	□□□□□ -0.82
CMR3	YPR013C	DIP2	Q12220	943 aa	Predicted RBP	9.79	□□□□□ -0.84
CMR3	YPR013C	RSE1	Q04693	1361 aa	Known RBP	9.54	□□□□□ -0.88
CMR3	YPR013C	AVT3	P36062	692 aa		9.51	□□□□□ -0.89
CMR3	YPR013C	MRPL32	P25348	183 aa		9.45	□□□□□ -0.9
CMR3	YPR013C	BUD31	P25337	157 aa	Predicted RBP	9.37	□□□□□ -0.91
CMR3	YPR013C	RPL17A	P05740	184 aa	Known RBP	9.3	□□□□□ -0.92
CMR3	YPR013C	RPL17B	P46990	184 aa	Known RBP	9.3	□□□□□ -0.92
CMR3	YPR013C	RQC2	Q12532	1038 aa	Known RBP	9.3	□□□□□ -0.92
CMR3	YPR013C	YGL015C	P33199	130 aa		9.22	□□□□□ -0.93
CMR3	YPR013C	REB1	P21538	810 aa		9.19	□□□□□ -0.94
CMR3	YPR013C	CDC27	P38042	758 aa		9.09	□□□□□ -0.95
CMR3	YPR013C	SPT21	P35209	758 aa		9.01	□□□□□ -0.97
CMR3	YPR013C	YKR023W	P36119	530 aa	Known RBP	8.97	□□□□□ -0.97
CMR3	YPR013C	MAP2	P38174	421 aa	Known RBP	8.8	□□□□□ -1
CMR3	YPR013C	UBP10	P53874	792 aa	Predicted RBP	8.78	□□□□□ -1
CMR3	YPR013C	TFC8	Q12308	588 aa		8.75	□□□□□ -1.01
CMR3	YPR013C	SIS1	P25294	352 aa	Known RBP	8.74	□□□□□ -1.01
CMR3	YPR013C	HO	P09932	586 aa		8.72	□□□□□ -1.01
CMR3	YPR013C	DCD1	P06773	312 aa		8.71	□□□□□ -1.02
CMR3	YPR013C	RIM101	P33400	625 aa		8.56	□□□□□ -1.04
CMR3	YPR013C	DMA1	P38823	416 aa		8.53	□□□□□ -1.04
CMR3	YPR013C	SCY1	P53009	804 aa		8.5	□□□□□ -1.05
CMR3	YPR013C	BCH2	P36122	765 aa		8.44	□□□□□ -1.06
CMR3	YPR013C	TAF7	Q05021	590 aa		8.44	□□□□□ -1.06
CMR3	YPR013C	SLX5	P32828	619 aa	Known RBP	8.38	□□□□□ -1.07
CMR3	YPR013C	TGL3	P40308	642 aa		8.37	□□□□□ -1.07
CMR3	YPR013C	PTP3	P40048	928 aa		8.31	□□□□□ -1.08
CMR3	YPR013C	OXP1	P28273	1286 aa		8.3	□□□□□ -1.08
CMR3	YPR013C	TIF4632	P39936	914 aa	Known RBP	8.3	□□□□□ -1.08
CMR3	YPR013C	UBP9	P39967	754 aa		8.3	□□□□□ -1.08
CMR3	YPR013C	EPS1	P40557	701 aa		8.19	□□□□□ -1.1
CMR3	YPR013C	BDF1	P35817	686 aa		8.17	□□□□□ -1.1
CMR3	YPR013C	LEO1	P38439	464 aa		8.16	□□□□□ -1.1
CMR3	YPR013C	SSP1	P38871	571 aa		8.12	□□□□□ -1.11
CMR3	YPR013C	MST1	P07236	462 aa		8.07	□□□□□ -1.12
CMR3	YPR013C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	7.96	□□□□□ -1.14	not detected
CMR3	YPR013C	RSM7	P47150	247 aa		7.95	□□□□□ -1.14
CMR3	YPR013C	YIL055C	P40523	627 aa	Known RBP	7.94	□□□□□ -1.14
CMR3	YPR013C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	7.94	□□□□□ -1.14	not detected
CMR3	YPR013C	YBL029C-A	Q3E756	94 aa		7.93	□□□□□ -1.14
CMR3	YPR013C	AI2	P03876	854 aa		7.91	□□□□□ -1.14
CMR3	YPR013C	YOR238W	Q08634	303 aa		7.9	□□□□□ -1.14
CMR3	YPR013C	YAH1	Q12184	172 aa	Known RBP	7.9	□□□□□ -1.14
CMR3	YPR013C	LEU3	P08638	886 aa		7.86	□□□□□ -1.15
CMR3	YPR013C	SAS10	Q12136	610 aa	Predicted RBP	7.85	□□□□□ -1.15
CMR3	YPR013C	VNX1	P42839	908 aa		7.84	□□□□□ -1.15
CMR3	YPR013C	BBC1	P47068	1157 aa		7.84	□□□□□ -1.15
CMR3	YPR013C	YLR271W	Q06152	274 aa		7.82	□□□□□ -1.16
CMR3	YPR013C	YAP5	P40574	245 aa		7.8	□□□□□ -1.16
CMR3	YPR013C	PSD2	P53037	1138 aa	Known RBP	7.77	□□□□□ -1.17
CMR3	YPR013C	MGA2	P40578	1113 aa		7.76	□□□□□ -1.17
CMR3	YPR013C	WSC3	Q12215	556 aa		7.69	□□□□□ -1.18
CMR3	YPR013C	SPP1	Q03012	353 aa		7.68	□□□□□ -1.18
CMR3	YPR013C	AIR2	Q12476	344 aa	Known RBP	7.68	□□□□□ -1.18
CMR3	YPR013C	FKH1	P40466	484 aa		7.67	□□□□□ -1.18
CMR3	YPR013C	TIF11	P38912	153 aa	Known RBP	7.64	□□□□□ -1.19
CMR3	YPR013C	RPN1	P38764	993 aa	Known RBP	7.62	□□□□□ -1.19
CMR3	YPR013C	CST9	Q06032	482 aa		7.61	□□□□□ -1.19
CMR3	YPR013C	MRM1	P25270	412 aa		7.6	□□□□□ -1.19
CMR3	YPR013C	PIB1	Q06651	286 aa		7.6	□□□□□ -1.19
CMR3	YPR013C	IOC2	Q12072	812 aa		7.59	□□□□□ -1.19
CMR3	YPR013C	GTT3	P39996	337 aa		7.56	□□□□□ -1.2
CMR3	YPR013C	DMA2	P53924	522 aa		7.54	□□□□□ -1.2
CMR3	YPR013C	VPS29	P38759	282 aa		7.53	□□□□□ -1.2
CMR3	YPR013C	LDB19	Q12502	818 aa		7.52	□□□□□ -1.21
CMR3	YPR013C	ULI1	P43604	169 aa		7.51	□□□□□ -1.21
CMR3	YPR013C	SPB4	P25808	606 aa	Predicted RBP	7.49	□□□□□ -1.21
CMR3	YPR013C	CKB1	P43639	278 aa		7.47	□□□□□ -1.21
CMR3	YPR013C	STS1	P38637	319 aa		7.46	□□□□□ -1.22
CMR3	YPR013C	YOL036W	Q08206	761 aa		7.46	□□□□□ -1.22
CMR3	YPR013C	MSB4	Q12317	492 aa		7.46	□□□□□ -1.22
CMR3	YPR013C	SET1	P38827	1080 aa	Known RBP	7.45	□□□□□ -1.22
CMR3	YPR013C	YJL171C	P46992	396 aa		7.45	□□□□□ -1.22
CMR3	YPR013C	RAM2	P29703	316 aa		7.43	□□□□□ -1.22
CMR3	YPR013C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	7.43	□□□□□ -1.22	not detected
CMR3	YPR013C	DBP1	P24784	617 aa	Known RBP	7.42	□□□□□ -1.22
CMR3	YPR013C	VPS70	P47161	811 aa		7.42	□□□□□ -1.22
CMR3	YPR013C	RCR1	P38212	213 aa		7.41	□□□□□ -1.22
CMR3	YPR013C	IFH1	P39520	1085 aa		7.41	□□□□□ -1.22
CMR3	YPR013C	YFR006W	P43590	535 aa		7.41	□□□□□ -1.22
CMR3	YPR013C	YPR148C	Q06523	435 aa		7.41	□□□□□ -1.22
CMR3	YPR013C	VMA1	P17255	1071 aa	Known RBP	7.4	□□□□□ -1.22
CMR3	YPR013C	SET4	P42948	560 aa		7.4	□□□□□ -1.22
CMR3	YPR013C	SAM3	Q08986	587 aa		7.4	□□□□□ -1.22
CMR3	YPR013C	TRP5	P00931	707 aa	Known RBP	7.39	□□□□□ -1.23
CMR3	YPR013C	RLF2	Q12495	606 aa		7.39	□□□□□ -1.23
CMR3	YPR013C	RTG3	P38165	486 aa		7.38	□□□□□ -1.23

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms