RNA–Protein interactions for RNA: YOL090W

MSH2, Transcript of Protein that binds to DNA mismatches, yeastyeast

Gene MSH2, Length 2,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSH2YOL090W DRS1P32892 752 aaKnown RBP7.26□□□□□ -1.25
MSH2YOL090W MTC1P47018 478 aaKnown RBP7.05□□□□□ -1.28
MSH2YOL090W TFA1P36100 482 aa6.4□□□□□ -1.38
MSH2YOL090W BFR2Q06631 534 aaKnown RBP6.34□□□□□ -1.39
MSH2YOL090W AVT3P36062 692 aa6.27□□□□□ -1.41
MSH2YOL090W DIP2Q12220 943 aaPredicted RBP6.13□□□□□ -1.43
MSH2YOL090W RQC2Q12532 1038 aaKnown RBP5.96□□□□□ -1.45
MSH2YOL090W TAF7Q05021 590 aa5.84□□□□□ -1.47
MSH2YOL090W RSE1Q04693 1361 aaKnown RBP5.63□□□□□ -1.51
MSH2YOL090W RPG1P38249 964 aaKnown RBP5.57□□□□□ -1.52
MSH2YOL090W PRI1P10363 409 aa5.56□□□□□ -1.52
MSH2YOL090W DMA1P38823 416 aa5.55□□□□□ -1.52
MSH2YOL090W ISW2Q08773 1120 aa5.51□□□□□ -1.53
MSH2YOL090W SPT21P35209 758 aa5.47□□□□□ -1.53
MSH2YOL090W RPL17AP05740 184 aaKnown RBP5.44□□□□□ -1.54
MSH2YOL090W RPL17BP46990 184 aaKnown RBP5.44□□□□□ -1.54
MSH2YOL090W LEO1P38439 464 aa5.39□□□□□ -1.55
MSH2YOL090W RIM101P33400 625 aa5.38□□□□□ -1.55
MSH2YOL090W FAP1P53971 965 aa5.32□□□□□ -1.56
MSH2YOL090W OXP1P28273 1286 aa5.3□□□□□ -1.56
MSH2YOL090W AAD16Q02895 342 aa5.3□□□□□ -1.56
MSH2YOL090W TSR3Q12094 313 aaKnown RBP5.26□□□□□ -1.57
MSH2YOL090W REB1P21538 810 aa5.24□□□□□ -1.57
MSH2YOL090W PTP3P40048 928 aa5.24□□□□□ -1.57
MSH2YOL090W YKR023WP36119 530 aaKnown RBP5.24□□□□□ -1.57
MSH2YOL090W YCK3P39962 524 aa5.21□□□□□ -1.58
MSH2YOL090W MON2P48563 1636 aaPredicted RBP5.16□□□□□ -1.58
MSH2YOL090W YLR271WQ06152 274 aa5.15□□□□□ -1.58
MSH2YOL090W SSP1P38871 571 aa5.14□□□□□ -1.59
MSH2YOL090W LEU3P08638 886 aa5.1□□□□□ -1.59
MSH2YOL090W DCD1P06773 312 aa5.08□□□□□ -1.6
MSH2YOL090W ABP1P15891 592 aaKnown RBP5.06□□□□□ -1.6
MSH2YOL090W CDC27P38042 758 aa5.05□□□□□ -1.6
MSH2YOL090W SAS10Q12136 610 aaPredicted RBP5.05□□□□□ -1.6
MSH2YOL090W YAH1Q12184 172 aaKnown RBP5.05□□□□□ -1.6
MSH2YOL090W TFC8Q12308 588 aa5.05□□□□□ -1.6
MSH2YOL090W HOP09932 586 aa5.04□□□□□ -1.6
MSH2YOL090W CST9Q06032 482 aa5.04□□□□□ -1.6
MSH2YOL090W PRY3P47033 881 aa5.03□□□□□ -1.6
MSH2YOL090W DMA2P53924 522 aa5.02□□□□□ -1.61
MSH2YOL090W PSD2P53037 1138 aaKnown RBP4.98□□□□□ -1.61
MSH2YOL090W RSM7P47150 247 aa4.95□□□□□ -1.62
MSH2YOL090W BCH2P36122 765 aa4.94□□□□□ -1.62
MSH2YOL090W MGA2P40578 1113 aa4.93□□□□□ -1.62
MSH2YOL090W IFH1P39520 1085 aa4.91□□□□□ -1.62
MSH2YOL090W RCR1P38212 213 aa4.9□□□□□ -1.63
MSH2YOL090W YIL055CP40523 627 aaKnown RBP4.89□□□□□ -1.63
MSH2YOL090W AI2P03876 854 aa4.88□□□□□ -1.63
MSH2YOL090W MRPL32P25348 183 aa4.87□□□□□ -1.63
MSH2YOL090W RAM2P29703 316 aa4.86□□□□□ -1.63
MSH2YOL090W RPN1P38764 993 aaKnown RBP4.86□□□□□ -1.63
MSH2YOL090W RLF2Q12495 606 aa4.86□□□□□ -1.63
MSH2YOL090W INO80P53115 1489 aa4.86□□□□□ -1.63
MSH2YOL090W ARP8Q12386 881 aaKnown RBP RIP-Chip data4.85□□□□□ -1.63 RIP-Chip
MSH2YOL090W EPS1P40557 701 aa4.82□□□□□ -1.64
MSH2YOL090W BDF1P35817 686 aa4.81□□□□□ -1.64
MSH2YOL090W IOC4Q04213 475 aa4.8□□□□□ -1.64
MSH2YOL090W ORC1P54784 914 aaPredicted RBP4.79□□□□□ -1.64
MSH2YOL090W KOG1P38873 1557 aa4.78□□□□□ -1.64
MSH2YOL090W NAP1P25293 417 aaKnown RBP4.78□□□□□ -1.64
MSH2YOL090W CKB1P43639 278 aa4.76□□□□□ -1.65
MSH2YOL090W MRM1P25270 412 aa4.75□□□□□ -1.65
MSH2YOL090W VPS29P38759 282 aa4.73□□□□□ -1.65
MSH2YOL090W YPR148CQ06523 435 aa4.73□□□□□ -1.65
MSH2YOL090W MAP2P38174 421 aaKnown RBP4.73□□□□□ -1.65
MSH2YOL090W SWR1Q05471 1514 aa4.7□□□□□ -1.66
MSH2YOL090W SCY1P53009 804 aa4.7□□□□□ -1.66
MSH2YOL090W HAA1Q12753 694 aaKnown RBP4.7□□□□□ -1.66
MSH2YOL090W SET1P38827 1080 aaKnown RBP4.69□□□□□ -1.66
MSH2YOL090W AIM44Q99299 758 aa4.69□□□□□ -1.66
MSH2YOL090W DNA2P38859 1522 aa4.68□□□□□ -1.66
MSH2YOL090W TY1B-DR4Q07793 1604 aa4.67□□□□□ -1.66
MSH2YOL090W STS1P38637 319 aa4.67□□□□□ -1.66
MSH2YOL090W YML020WQ03722 664 aa4.67□□□□□ -1.66
MSH2YOL090W BBC1P47068 1157 aa4.66□□□□□ -1.66
MSH2YOL090W SPB4P25808 606 aaPredicted RBP4.66□□□□□ -1.66
MSH2YOL090W NOP8Q08287 484 aaPredicted RBP4.66□□□□□ -1.66
MSH2YOL090W EDS1P38073 919 aa4.65□□□□□ -1.67
MSH2YOL090W MAK11P20484 414 aaKnown RBP4.64□□□□□ -1.67
MSH2YOL090W TCB3Q03640 1545 aaKnown RBP4.64□□□□□ -1.67
MSH2YOL090W RTG3P38165 486 aa4.63□□□□□ -1.67
MSH2YOL090W KIN1P13185 1064 aa4.61□□□□□ -1.67
MSH2YOL090W VPS70P47161 811 aa4.61□□□□□ -1.67
MSH2YOL090W UBP10P53874 792 aaPredicted RBP4.61□□□□□ -1.67
MSH2YOL090W COQ8P27697 501 aa4.59□□□□□ -1.67
MSH2YOL090W DSF2P38213 736 aa4.59□□□□□ -1.68
MSH2YOL090W SLX8P40072 274 aa4.57□□□□□ -1.68
MSH2YOL090W GUA1P38625 525 aaKnown RBP4.55□□□□□ -1.68
MSH2YOL090W YFR006WP43590 535 aa4.55□□□□□ -1.68
MSH2YOL090W NUP42P49686 430 aaKnown RBP4.55□□□□□ -1.68
MSH2YOL090W YNR021WP53723 404 aaKnown RBP4.55□□□□□ -1.68
MSH2YOL090W GLC3P32775 704 aa4.54□□□□□ -1.68
MSH2YOL090W MAM3Q12296 706 aa4.54□□□□□ -1.68
MSH2YOL090W DIT2P21595 489 aa4.52□□□□□ -1.69
MSH2YOL090W DBP1P24784 617 aaKnown RBP4.52□□□□□ -1.69
MSH2YOL090W YMR1P47147 688 aaKnown RBP RIP-Chip data4.52□□□□□ -1.69not detected
MSH2YOL090W YDR090CQ03193 310 aa4.52□□□□□ -1.69
MSH2YOL090W PBS2P08018 668 aa4.52□□□□□ -1.69
MSH2YOL090W GEF1P37020 779 aa4.52□□□□□ -1.69
MSH2YOL090W SUB2Q07478 446 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms