RNA–Protein interactions for RNA: YNL248C

RPA49, Transcript of RNA polymerase I subunit A49, yeastyeast

Gene RPA49, Length 1,248 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPA49YNL248C MTC1P47018 478 aaKnown RBP13.22□□□□□ -0.29
RPA49YNL248C FAP1P53971 965 aa12.39□□□□□ -0.43
RPA49YNL248C DRS1P32892 752 aaKnown RBP11.86□□□□□ -0.51
RPA49YNL248C PRY3P47033 881 aa11.68□□□□□ -0.54
RPA49YNL248C PRI1P10363 409 aa11.42□□□□□ -0.58
RPA49YNL248C AAD16Q02895 342 aa11.39□□□□□ -0.59
RPA49YNL248C YCK3P39962 524 aa11.09□□□□□ -0.63
RPA49YNL248C ISW2Q08773 1120 aa11.03□□□□□ -0.64
RPA49YNL248C RPG1P38249 964 aaKnown RBP10.96□□□□□ -0.65
RPA49YNL248C HAA1Q12753 694 aaKnown RBP10.93□□□□□ -0.66
RPA49YNL248C TSR3Q12094 313 aaKnown RBP10.76□□□□□ -0.69
RPA49YNL248C DIP2Q12220 943 aaPredicted RBP10.58□□□□□ -0.72
RPA49YNL248C RSE1Q04693 1361 aaKnown RBP10.35□□□□□ -0.75
RPA49YNL248C MRPL32P25348 183 aa10.32□□□□□ -0.76
RPA49YNL248C AVT3P36062 692 aa10.08□□□□□ -0.8
RPA49YNL248C RPL17AP05740 184 aaKnown RBP10.06□□□□□ -0.8
RPA49YNL248C RPL17BP46990 184 aaKnown RBP10.06□□□□□ -0.8
RPA49YNL248C REB1P21538 810 aa10.03□□□□□ -0.8
RPA49YNL248C YGL015CP33199 130 aa10.03□□□□□ -0.8
RPA49YNL248C CDC27P38042 758 aa9.76□□□□□ -0.85
RPA49YNL248C BFR2Q06631 534 aaKnown RBP9.63□□□□□ -0.87
RPA49YNL248C SPT21P35209 758 aa9.62□□□□□ -0.87
RPA49YNL248C YKR023WP36119 530 aaKnown RBP9.62□□□□□ -0.87
RPA49YNL248C UBP10P53874 792 aaPredicted RBP9.51□□□□□ -0.89
RPA49YNL248C MAP2P38174 421 aaKnown RBP9.5□□□□□ -0.89
RPA49YNL248C HOP09932 586 aa9.41□□□□□ -0.9
RPA49YNL248C BUD31P25337 157 aaPredicted RBP9.41□□□□□ -0.9
RPA49YNL248C TFC8Q12308 588 aa9.41□□□□□ -0.9
RPA49YNL248C DCD1P06773 312 aa9.38□□□□□ -0.91
RPA49YNL248C SCY1P53009 804 aa9.21□□□□□ -0.94
RPA49YNL248C RIM101P33400 625 aa9.18□□□□□ -0.94
RPA49YNL248C SLX5P32828 619 aaKnown RBP9.11□□□□□ -0.95
RPA49YNL248C TIF4632P39936 914 aaKnown RBP9.1□□□□□ -0.95
RPA49YNL248C TGL3P40308 642 aa9.1□□□□□ -0.95
RPA49YNL248C BCH2P36122 765 aa9.09□□□□□ -0.95
RPA49YNL248C SGS1P35187 1447 aa8.95□□□□□ -0.98
RPA49YNL248C UBP9P39967 754 aa8.94□□□□□ -0.98
RPA49YNL248C SIS1P25294 352 aaKnown RBP8.9□□□□□ -0.98
RPA49YNL248C OXP1P28273 1286 aa8.87□□□□□ -0.99
RPA49YNL248C EPS1P40557 701 aa8.82□□□□□ -1
RPA49YNL248C BDF1P35817 686 aa8.8□□□□□ -1
RPA49YNL248C INO80P53115 1489 aa8.7□□□□□ -1.02
RPA49YNL248C PTP3P40048 928 aa8.7□□□□□ -1.02
RPA49YNL248C MST1P07236 462 aa8.68□□□□□ -1.02
RPA49YNL248C YIL055CP40523 627 aaKnown RBP8.68□□□□□ -1.02
RPA49YNL248C YOR238WQ08634 303 aa8.61□□□□□ -1.03
RPA49YNL248C YBL029C-AQ3E756 94 aa8.6□□□□□ -1.03
RPA49YNL248C RSM7P47150 247 aa8.58□□□□□ -1.04
RPA49YNL248C SPA2P23201 1466 aaKnown RBP8.57□□□□□ -1.04
RPA49YNL248C TCB3Q03640 1545 aaKnown RBP8.57□□□□□ -1.04
RPA49YNL248C NSR1P27476 414 aaKnown RBP RIP-Chip data8.56□□□□□ -1.04not detected
RPA49YNL248C SSN2P38931 1420 aa8.55□□□□□ -1.04
RPA49YNL248C BBC1P47068 1157 aa8.55□□□□□ -1.04
RPA49YNL248C AI2P03876 854 aa8.54□□□□□ -1.04
RPA49YNL248C TFA1P36100 482 aa8.52□□□□□ -1.05
RPA49YNL248C VNX1P42839 908 aa8.5□□□□□ -1.05
RPA49YNL248C YAH1Q12184 172 aaKnown RBP8.5□□□□□ -1.05
RPA49YNL248C YAP5P40574 245 aa8.48□□□□□ -1.05
RPA49YNL248C WSC3Q12215 556 aa8.4□□□□□ -1.06
RPA49YNL248C SPP1Q03012 353 aa8.39□□□□□ -1.07
RPA49YNL248C TY1B-DR4Q07793 1604 aa8.38□□□□□ -1.07
RPA49YNL248C YLR271WQ06152 274 aa8.37□□□□□ -1.07
RPA49YNL248C SPT6P23615 1451 aaKnown RBP8.31□□□□□ -1.08
RPA49YNL248C TIF11P38912 153 aaKnown RBP8.3□□□□□ -1.08
RPA49YNL248C PSD2P53037 1138 aaKnown RBP8.3□□□□□ -1.08
RPA49YNL248C HSL1P34244 1518 aa8.29□□□□□ -1.08
RPA49YNL248C MON2P48563 1636 aaPredicted RBP8.29□□□□□ -1.08
RPA49YNL248C GTT3P39996 337 aa8.28□□□□□ -1.08
RPA49YNL248C AIR2Q12476 344 aaKnown RBP8.28□□□□□ -1.08
RPA49YNL248C FKH1P40466 484 aa8.26□□□□□ -1.09
RPA49YNL248C PIB1Q06651 286 aa8.23□□□□□ -1.09
RPA49YNL248C SWR1Q05471 1514 aa8.21□□□□□ -1.1
RPA49YNL248C MRM1P25270 412 aa8.21□□□□□ -1.1
RPA49YNL248C YJL171CP46992 396 aa8.19□□□□□ -1.1
RPA49YNL248C ULI1P43604 169 aa8.18□□□□□ -1.1
RPA49YNL248C IOC2Q12072 812 aa8.18□□□□□ -1.1
RPA49YNL248C LDB19Q12502 818 aa8.17□□□□□ -1.1
RPA49YNL248C XRN1P22147 1528 aaKnown RBP8.16□□□□□ -1.1
RPA49YNL248C HIR3P47171 1648 aa8.16□□□□□ -1.1
RPA49YNL248C SSP1P38871 571 aa8.12□□□□□ -1.11
RPA49YNL248C MSB4Q12317 492 aa8.09□□□□□ -1.11
RPA49YNL248C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.09□□□□□ -1.11not detected
RPA49YNL248C VPS29P38759 282 aa8.06□□□□□ -1.12
RPA49YNL248C BMT6Q12291 365 aa8.06□□□□□ -1.12
RPA49YNL248C YOL036WQ08206 761 aa8.05□□□□□ -1.12
RPA49YNL248C EAP1P36041 632 aaKnown RBP8.04□□□□□ -1.12
RPA49YNL248C YMR1P47147 688 aaKnown RBP RIP-Chip data8.04□□□□□ -1.12not detected
RPA49YNL248C CST9Q06032 482 aa8.04□□□□□ -1.12
RPA49YNL248C REV3P14284 1504 aa8.03□□□□□ -1.12
RPA49YNL248C DBP1P24784 617 aaKnown RBP8.02□□□□□ -1.13
RPA49YNL248C SET4P42948 560 aa8.02□□□□□ -1.13
RPA49YNL248C TAF2P23255 1407 aa8.02□□□□□ -1.13
RPA49YNL248C TRP5P00931 707 aaKnown RBP8□□□□□ -1.13
RPA49YNL248C RTG1P32607 177 aa8□□□□□ -1.13
RPA49YNL248C YFR006WP43590 535 aa8□□□□□ -1.13
RPA49YNL248C RTG3P38165 486 aa7.99□□□□□ -1.13
RPA49YNL248C STS1P38637 319 aa7.98□□□□□ -1.13
RPA49YNL248C VMA1P17255 1071 aaKnown RBP7.97□□□□□ -1.13
RPA49YNL248C MGA2P40578 1113 aa7.97□□□□□ -1.13
RPA49YNL248C DNA2P38859 1522 aa7.97□□□□□ -1.13
Retrieved 100 of 5,963 RNA–protein pairs in 33.8 ms