RNA–Protein interactions for RNA: YGR156W

PTI1, Transcript of Essential component of CPF (cleavage and polyadenylation factor), yeastyeast

Gene PTI1, Length 1,278 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PTI1YGR156W FAP1P53971 965 aa16.7■□□□□ 0.26
PTI1YGR156W MTC1P47018 478 aaKnown RBP16.59■□□□□ 0.25
PTI1YGR156W PRY3P47033 881 aa15.77■□□□□ 0.12
PTI1YGR156W AAD16Q02895 342 aa14.97□□□□□ -0.01
PTI1YGR156W YCK3P39962 524 aa14.86□□□□□ -0.03
PTI1YGR156W PRI1P10363 409 aa14.85□□□□□ -0.03
PTI1YGR156W DRS1P32892 752 aaKnown RBP14.79□□□□□ -0.04
PTI1YGR156W HAA1Q12753 694 aaKnown RBP14.72□□□□□ -0.05
PTI1YGR156W ISW2Q08773 1120 aa14.03□□□□□ -0.16
PTI1YGR156W RPG1P38249 964 aaKnown RBP13.94□□□□□ -0.18
PTI1YGR156W TSR3Q12094 313 aaKnown RBP13.93□□□□□ -0.18
PTI1YGR156W MRPL32P25348 183 aa13.4□□□□□ -0.26
PTI1YGR156W YGL015CP33199 130 aa13.33□□□□□ -0.28
PTI1YGR156W DIP2Q12220 943 aaPredicted RBP13.15□□□□□ -0.3
PTI1YGR156W BUD31P25337 157 aaPredicted RBP12.95□□□□□ -0.34
PTI1YGR156W RSE1Q04693 1361 aaKnown RBP12.87□□□□□ -0.35
PTI1YGR156W REB1P21538 810 aa12.56□□□□□ -0.4
PTI1YGR156W RPL17AP05740 184 aaKnown RBP12.54□□□□□ -0.4
PTI1YGR156W RPL17BP46990 184 aaKnown RBP12.54□□□□□ -0.4
PTI1YGR156W AVT3P36062 692 aa12.44□□□□□ -0.42
PTI1YGR156W CDC27P38042 758 aa12.44□□□□□ -0.42
PTI1YGR156W UBP10P53874 792 aaPredicted RBP12.3□□□□□ -0.44
PTI1YGR156W MAP2P38174 421 aaKnown RBP12.24□□□□□ -0.45
PTI1YGR156W SIS1P25294 352 aaKnown RBP12.16□□□□□ -0.46
PTI1YGR156W YKR023WP36119 530 aaKnown RBP12.08□□□□□ -0.48
PTI1YGR156W BFR2Q06631 534 aaKnown RBP12□□□□□ -0.49
PTI1YGR156W SPT21P35209 758 aa11.98□□□□□ -0.49
PTI1YGR156W UBP9P39967 754 aa11.93□□□□□ -0.5
PTI1YGR156W DCD1P06773 312 aa11.84□□□□□ -0.51
PTI1YGR156W HOP09932 586 aa11.82□□□□□ -0.52
PTI1YGR156W TIF4632P39936 914 aaKnown RBP11.81□□□□□ -0.52
PTI1YGR156W TFC8Q12308 588 aa11.81□□□□□ -0.52
PTI1YGR156W TGL3P40308 642 aa11.8□□□□□ -0.52
PTI1YGR156W SCY1P53009 804 aa11.69□□□□□ -0.54
PTI1YGR156W SLX5P32828 619 aaKnown RBP11.64□□□□□ -0.55
PTI1YGR156W BCH2P36122 765 aa11.38□□□□□ -0.59
PTI1YGR156W RIM101P33400 625 aa11.31□□□□□ -0.6
PTI1YGR156W YBL029C-AQ3E756 94 aa11.18□□□□□ -0.62
PTI1YGR156W MST1P07236 462 aa11.12□□□□□ -0.63
PTI1YGR156W EPS1P40557 701 aa11.02□□□□□ -0.65
PTI1YGR156W BDF1P35817 686 aa11□□□□□ -0.65
PTI1YGR156W VNX1P42839 908 aa10.99□□□□□ -0.65
PTI1YGR156W YOR238WQ08634 303 aa10.98□□□□□ -0.65
PTI1YGR156W OXP1P28273 1286 aa10.94□□□□□ -0.66
PTI1YGR156W PTP3P40048 928 aa10.89□□□□□ -0.67
PTI1YGR156W SPP1Q03012 353 aa10.89□□□□□ -0.67
PTI1YGR156W AIR2Q12476 344 aaKnown RBP10.85□□□□□ -0.67
PTI1YGR156W YIL055CP40523 627 aaKnown RBP10.84□□□□□ -0.67
PTI1YGR156W YJL171CP46992 396 aa10.82□□□□□ -0.68
PTI1YGR156W NSR1P27476 414 aaKnown RBP RIP-Chip data10.8□□□□□ -0.68not detected
PTI1YGR156W FKH1P40466 484 aa10.76□□□□□ -0.69
PTI1YGR156W WSC3Q12215 556 aa10.75□□□□□ -0.69
PTI1YGR156W TIF11P38912 153 aaKnown RBP10.67□□□□□ -0.7
PTI1YGR156W YAP5P40574 245 aa10.67□□□□□ -0.7
PTI1YGR156W BBC1P47068 1157 aa10.66□□□□□ -0.7
PTI1YGR156W YAH1Q12184 172 aaKnown RBP10.65□□□□□ -0.7
PTI1YGR156W RSM7P47150 247 aa10.64□□□□□ -0.71
PTI1YGR156W AI2P03876 854 aa10.61□□□□□ -0.71
PTI1YGR156W BMT6Q12291 365 aa10.55□□□□□ -0.72
PTI1YGR156W LDB19Q12502 818 aa10.51□□□□□ -0.73
PTI1YGR156W GTT3P39996 337 aa10.46□□□□□ -0.73
PTI1YGR156W IOC2Q12072 812 aa10.44□□□□□ -0.74
PTI1YGR156W ULI1P43604 169 aa10.43□□□□□ -0.74
PTI1YGR156W TFA1P36100 482 aa10.37□□□□□ -0.75
PTI1YGR156W YLR271WQ06152 274 aa10.35□□□□□ -0.75
PTI1YGR156W PIB1Q06651 286 aa10.31□□□□□ -0.76
PTI1YGR156W PSD2P53037 1138 aaKnown RBP10.23□□□□□ -0.77
PTI1YGR156W MRM1P25270 412 aa10.22□□□□□ -0.77
PTI1YGR156W RTG1P32607 177 aa10.18□□□□□ -0.78
PTI1YGR156W MSB4Q12317 492 aa10.18□□□□□ -0.78
PTI1YGR156W EAP1P36041 632 aaKnown RBP10.17□□□□□ -0.78
PTI1YGR156W NCR1Q12200 1170 aa10.15□□□□□ -0.78
PTI1YGR156W YOL036WQ08206 761 aa10.08□□□□□ -0.8
PTI1YGR156W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.08□□□□□ -0.8not detected
PTI1YGR156W TRP5P00931 707 aaKnown RBP10.07□□□□□ -0.8
PTI1YGR156W SET4P42948 560 aa10.07□□□□□ -0.8
PTI1YGR156W SSP1P38871 571 aa10.06□□□□□ -0.8
PTI1YGR156W SEC61P32915 480 aa10.03□□□□□ -0.8
PTI1YGR156W YNL035CP53962 389 aaKnown RBP10.03□□□□□ -0.8
PTI1YGR156W BCK2P33306 851 aa10□□□□□ -0.81
PTI1YGR156W YFR006WP43590 535 aa9.98□□□□□ -0.81
PTI1YGR156W CST9Q06032 482 aa9.98□□□□□ -0.81
PTI1YGR156W DBP1P24784 617 aaKnown RBP9.97□□□□□ -0.81
PTI1YGR156W YMR1P47147 688 aaKnown RBP RIP-Chip data9.97□□□□□ -0.81not detected
PTI1YGR156W VPS29P38759 282 aa9.93□□□□□ -0.82
PTI1YGR156W RTG3P38165 486 aa9.92□□□□□ -0.82
PTI1YGR156W VMA1P17255 1071 aaKnown RBP9.89□□□□□ -0.83
PTI1YGR156W TFG1P41895 735 aaPredicted RBP9.89□□□□□ -0.83
PTI1YGR156W STS1P38637 319 aa9.88□□□□□ -0.83
PTI1YGR156W MGA2P40578 1113 aa9.88□□□□□ -0.83
PTI1YGR156W CHL1P22516 861 aaPredicted RBP9.86□□□□□ -0.83
PTI1YGR156W SAP30P38429 201 aa9.86□□□□□ -0.83
PTI1YGR156W SAM3Q08986 587 aa9.85□□□□□ -0.83
PTI1YGR156W RCR1P38212 213 aa9.8□□□□□ -0.84
PTI1YGR156W DAN4P47179 1161 aa9.8□□□□□ -0.84
PTI1YGR156W RGA2Q06407 1009 aa9.78□□□□□ -0.84
PTI1YGR156W PRE3P38624 215 aa9.77□□□□□ -0.85
PTI1YGR156W YDL129WQ07555 291 aa9.75□□□□□ -0.85
PTI1YGR156W JIP4Q03361 876 aa9.72□□□□□ -0.85
PTI1YGR156W GYP5Q12344 894 aa9.69□□□□□ -0.86
Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms