RNA–Protein interactions for RNA: YGR100W

MDR1, Transcript of Cytoplasmic GTPase-activating protein, yeast

Gene MDR1, Length 2,853 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MDR1	YGR100W	BFR2	Q06631	534 aa	Known RBP	7.29	□□□□□ -1.24
MDR1	YGR100W	RQC2	Q12532	1038 aa	Known RBP	7.29	□□□□□ -1.24
MDR1	YGR100W	NOP2	P40991	618 aa	Known RBP	6.74	□□□□□ -1.33
MDR1	YGR100W	EBP2	P36049	427 aa	Known RBP	6.59	□□□□□ -1.36
MDR1	YGR100W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	6.56	□□□□□ -1.36	not detected
MDR1	YGR100W	CAB3	P36076	571 aa		6.56	□□□□□ -1.36
MDR1	YGR100W	URN1	Q06525	465 aa	Known RBP	6.55	□□□□□ -1.36
MDR1	YGR100W	SIS2	P36024	562 aa		6.46	□□□□□ -1.38
MDR1	YGR100W	AVT3	P36062	692 aa		6.43	□□□□□ -1.38
MDR1	YGR100W	YPR148C	Q06523	435 aa		6.4	□□□□□ -1.38
MDR1	YGR100W	SPA2	P23201	1466 aa	Known RBP	6.34	□□□□□ -1.39
MDR1	YGR100W	YFR016C	P43597	1233 aa	Known RBP	6.28	□□□□□ -1.4
MDR1	YGR100W	SKI3	P17883	1432 aa	Known RBP	6.27	□□□□□ -1.41
MDR1	YGR100W	SSN2	P38931	1420 aa		6.27	□□□□□ -1.41
MDR1	YGR100W	SGS1	P35187	1447 aa		6.23	□□□□□ -1.41
MDR1	YGR100W	TAF7	Q05021	590 aa		6.22	□□□□□ -1.41
MDR1	YGR100W	DRS1	P32892	752 aa	Known RBP	6.15	□□□□□ -1.43
MDR1	YGR100W	CWC22	P53333	577 aa	Known RBP	6.15	□□□□□ -1.43
MDR1	YGR100W	RSE1	Q04693	1361 aa	Known RBP	6.08	□□□□□ -1.44
MDR1	YGR100W	ENP1	P38333	483 aa	Known RBP	6.06	□□□□□ -1.44
MDR1	YGR100W	RPS0B	P46654	252 aa	Known RBP	6.05	□□□□□ -1.44
MDR1	YGR100W	LEO1	P38439	464 aa		6.04	□□□□□ -1.44
MDR1	YGR100W	KRI1	P42846	591 aa	Known RBP	6.03	□□□□□ -1.44
MDR1	YGR100W	DIP2	Q12220	943 aa	Predicted RBP	6.02	□□□□□ -1.45
MDR1	YGR100W	AIM44	Q99299	758 aa		6	□□□□□ -1.45
MDR1	YGR100W	TCB3	Q03640	1545 aa	Known RBP	5.99	□□□□□ -1.45
MDR1	YGR100W	TCB2	P48231	1178 aa		5.96	□□□□□ -1.45
MDR1	YGR100W	ENV11	P53246	860 aa		5.96	□□□□□ -1.45
MDR1	YGR100W	SPT7	P35177	1332 aa		5.95	□□□□□ -1.46
MDR1	YGR100W	MMS22	Q06164	1454 aa		5.93	□□□□□ -1.46
MDR1	YGR100W	SPT21	P35209	758 aa		5.93	□□□□□ -1.46
MDR1	YGR100W	MNN4	P36044	1178 aa		5.93	□□□□□ -1.46
MDR1	YGR100W	CLC1	P17891	233 aa		5.92	□□□□□ -1.46
MDR1	YGR100W	SEC3	P33332	1336 aa	Known RBP	5.91	□□□□□ -1.46
MDR1	YGR100W	STH1	P32597	1359 aa		5.91	□□□□□ -1.46
MDR1	YGR100W	IME2	P32581	645 aa		5.89	□□□□□ -1.47
MDR1	YGR100W	PRS1	P32895	427 aa	Known RBP	5.89	□□□□□ -1.47
MDR1	YGR100W	POL5	P39985	1022 aa	Known RBP	5.89	□□□□□ -1.47
MDR1	YGR100W	UFD4	P33202	1483 aa		5.88	□□□□□ -1.47
MDR1	YGR100W	PSH1	Q12161	406 aa		5.87	□□□□□ -1.47
MDR1	YGR100W	DEF1	P35732	738 aa	Known RBP	5.85	□□□□□ -1.47
MDR1	YGR100W	FPR3	P38911	411 aa	Known RBP	5.85	□□□□□ -1.47
MDR1	YGR100W	XRN1	P22147	1528 aa	Known RBP	5.84	□□□□□ -1.47
MDR1	YGR100W	LEU3	P08638	886 aa		5.84	□□□□□ -1.47
MDR1	YGR100W	CFT1	Q06632	1357 aa	Known RBP	5.84	□□□□□ -1.48
MDR1	YGR100W	YGR130C	P53278	816 aa		5.83	□□□□□ -1.48
MDR1	YGR100W	CHD1	P32657	1468 aa		5.82	□□□□□ -1.48
MDR1	YGR100W	NUG1	P40010	520 aa	Known RBP	5.82	□□□□□ -1.48
MDR1	YGR100W	YRB30	P53107	440 aa	Predicted RBP	5.82	□□□□□ -1.48
MDR1	YGR100W	MON2	P48563	1636 aa	Predicted RBP	5.8	□□□□□ -1.48
MDR1	YGR100W	TRM732	Q03496	1420 aa		5.8	□□□□□ -1.48
MDR1	YGR100W	TFA1	P36100	482 aa		5.8	□□□□□ -1.48
MDR1	YGR100W	OPY1	P38271	328 aa		5.8	□□□□□ -1.48
MDR1	YGR100W	SAS10	Q12136	610 aa	Predicted RBP	5.8	□□□□□ -1.48
MDR1	YGR100W	SPP41	P38904	1435 aa		5.79	□□□□□ -1.48
MDR1	YGR100W	RNA1	P11745	407 aa	Known RBP	5.78	□□□□□ -1.48
MDR1	YGR100W	IOC4	Q04213	475 aa		5.78	□□□□□ -1.48
MDR1	YGR100W	FUN12	P39730	1002 aa	Known RBP	5.78	□□□□□ -1.48
MDR1	YGR100W	EAF7	P53911	425 aa	Known RBP	5.78	□□□□□ -1.48
MDR1	YGR100W	FPR4	Q06205	392 aa	Predicted RBP	5.77	□□□□□ -1.49
MDR1	YGR100W	INO80	P53115	1489 aa		5.77	□□□□□ -1.49
MDR1	YGR100W	NOP53	Q12080	455 aa	Known RBP	5.76	□□□□□ -1.49
MDR1	YGR100W	IKI3	Q06706	1349 aa	Known RBP	5.76	□□□□□ -1.49
MDR1	YGR100W	RPC31	P17890	251 aa		5.76	□□□□□ -1.49
MDR1	YGR100W	SWE1	P32944	819 aa		5.76	□□□□□ -1.49
MDR1	YGR100W	ECM5	Q03214	1411 aa		5.75	□□□□□ -1.49
MDR1	YGR100W	MTC1	P47018	478 aa	Known RBP	5.75	□□□□□ -1.49
MDR1	YGR100W	SPT2	P06843	333 aa	Predicted RBP	5.75	□□□□□ -1.49
MDR1	YGR100W	RTT106	P40161	455 aa		5.75	□□□□□ -1.49
MDR1	YGR100W	RLP24	Q07915	199 aa	Known RBP	5.75	□□□□□ -1.49
MDR1	YGR100W	QCR6	P00127	147 aa		5.74	□□□□□ -1.49
MDR1	YGR100W	SSM4	P40318	1319 aa		5.73	□□□□□ -1.49
MDR1	YGR100W	IFH1	P39520	1085 aa		5.72	□□□□□ -1.49
MDR1	YGR100W	SNF7	P39929	240 aa	Known RBP	5.7	□□□□□ -1.5
MDR1	YGR100W	NAP1	P25293	417 aa	Known RBP	5.7	□□□□□ -1.5
MDR1	YGR100W	RLF2	Q12495	606 aa		5.7	□□□□□ -1.5
MDR1	YGR100W	RAD26	P40352	1085 aa		5.69	□□□□□ -1.5
MDR1	YGR100W	GRX3	Q03835	250 aa		5.69	□□□□□ -1.5
MDR1	YGR100W	PSD2	P53037	1138 aa	Known RBP	5.68	□□□□□ -1.5
MDR1	YGR100W	PDR10	P51533	1564 aa		5.68	□□□□□ -1.5
MDR1	YGR100W	BUD4	P47136	1447 aa		5.68	□□□□□ -1.5
MDR1	YGR100W	PAF1	P38351	445 aa		5.67	□□□□□ -1.5
MDR1	YGR100W	SPC110	P32380	944 aa		5.66	□□□□□ -1.5
MDR1	YGR100W	DOS2	P54858	310 aa		5.66	□□□□□ -1.5
MDR1	YGR100W	MYO2	P19524	1574 aa	Known RBP	5.65	□□□□□ -1.5
MDR1	YGR100W	CTR9	P89105	1077 aa		5.65	□□□□□ -1.5
MDR1	YGR100W	SRB8	P25648	1427 aa		5.65	□□□□□ -1.51
MDR1	YGR100W	ROX1	P25042	368 aa		5.65	□□□□□ -1.51
MDR1	YGR100W	DJP1	P40564	432 aa		5.65	□□□□□ -1.51
MDR1	YGR100W	SPT6	P23615	1451 aa	Known RBP	5.64	□□□□□ -1.51
MDR1	YGR100W	TOP2	P06786	1428 aa	Known RBP	5.63	□□□□□ -1.51
MDR1	YGR100W	SLN1	P39928	1220 aa	Predicted RBP	5.63	□□□□□ -1.51
MDR1	YGR100W	ETT1	Q08421	412 aa	Known RBP	5.63	□□□□□ -1.51
MDR1	YGR100W	YNL011C	P53980	444 aa		5.62	□□□□□ -1.51
MDR1	YGR100W	NMD2	P38798	1089 aa	Known RBP	5.62	□□□□□ -1.51
MDR1	YGR100W	YPP1	P46951	817 aa		5.62	□□□□□ -1.51
MDR1	YGR100W	PEP1	P32319	1579 aa		5.62	□□□□□ -1.51
MDR1	YGR100W	MSH3	P25336	1018 aa		5.61	□□□□□ -1.51
MDR1	YGR100W	YTA7	P40340	1379 aa		5.61	□□□□□ -1.51
MDR1	YGR100W	CLB5	P30283	435 aa		5.6	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 26.5 ms