RNA–Protein interactions for RNA: YDR484W

VPS52, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS52, Length 1,926 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS52YDR484W MTC1P47018 478 aaKnown RBP11.08□□□□□ -0.64
VPS52YDR484W FAP1P53971 965 aa11.07□□□□□ -0.64
VPS52YDR484W PRY3P47033 881 aa10.43□□□□□ -0.74
VPS52YDR484W AAD16Q02895 342 aa9.95□□□□□ -0.82
VPS52YDR484W PRI1P10363 409 aa9.86□□□□□ -0.83
VPS52YDR484W YCK3P39962 524 aa9.73□□□□□ -0.85
VPS52YDR484W HAA1Q12753 694 aaKnown RBP9.73□□□□□ -0.85
VPS52YDR484W DRS1P32892 752 aaKnown RBP9.46□□□□□ -0.9
VPS52YDR484W ISW2Q08773 1120 aa9.43□□□□□ -0.9
VPS52YDR484W RPG1P38249 964 aaKnown RBP9.36□□□□□ -0.91
VPS52YDR484W TSR3Q12094 313 aaKnown RBP9.31□□□□□ -0.92
VPS52YDR484W MRPL32P25348 183 aa8.97□□□□□ -0.97
VPS52YDR484W YGL015CP33199 130 aa8.86□□□□□ -0.99
VPS52YDR484W DIP2Q12220 943 aaPredicted RBP8.63□□□□□ -1.03
VPS52YDR484W RSE1Q04693 1361 aaKnown RBP8.61□□□□□ -1.03
VPS52YDR484W BUD31P25337 157 aaPredicted RBP8.56□□□□□ -1.04
VPS52YDR484W REB1P21538 810 aa8.46□□□□□ -1.06
VPS52YDR484W RPL17AP05740 184 aaKnown RBP8.41□□□□□ -1.06
VPS52YDR484W RPL17BP46990 184 aaKnown RBP8.41□□□□□ -1.06
VPS52YDR484W CDC27P38042 758 aa8.3□□□□□ -1.08
VPS52YDR484W UBP10P53874 792 aaPredicted RBP8.17□□□□□ -1.1
VPS52YDR484W MAP2P38174 421 aaKnown RBP8.15□□□□□ -1.1
VPS52YDR484W SIS1P25294 352 aaKnown RBP8.05□□□□□ -1.12
VPS52YDR484W YKR023WP36119 530 aaKnown RBP8.05□□□□□ -1.12
VPS52YDR484W AVT3P36062 692 aa8.01□□□□□ -1.13
VPS52YDR484W UBP9P39967 754 aa7.94□□□□□ -1.14
VPS52YDR484W HOP09932 586 aa7.91□□□□□ -1.14
VPS52YDR484W TIF4632P39936 914 aaKnown RBP7.9□□□□□ -1.15
VPS52YDR484W DCD1P06773 312 aa7.89□□□□□ -1.15
VPS52YDR484W SPT21P35209 758 aa7.89□□□□□ -1.15
VPS52YDR484W TFC8Q12308 588 aa7.89□□□□□ -1.15
VPS52YDR484W TGL3P40308 642 aa7.87□□□□□ -1.15
VPS52YDR484W SCY1P53009 804 aa7.84□□□□□ -1.15
VPS52YDR484W SLX5P32828 619 aaKnown RBP7.8□□□□□ -1.16
VPS52YDR484W BCH2P36122 765 aa7.6□□□□□ -1.19
VPS52YDR484W RIM101P33400 625 aa7.46□□□□□ -1.22
VPS52YDR484W BFR2Q06631 534 aaKnown RBP7.44□□□□□ -1.22
VPS52YDR484W YBL029C-AQ3E756 94 aa7.43□□□□□ -1.22
VPS52YDR484W MST1P07236 462 aa7.39□□□□□ -1.23
VPS52YDR484W YOR238WQ08634 303 aa7.37□□□□□ -1.23
VPS52YDR484W EPS1P40557 701 aa7.35□□□□□ -1.23
VPS52YDR484W BDF1P35817 686 aa7.34□□□□□ -1.23
VPS52YDR484W VNX1P42839 908 aa7.33□□□□□ -1.24
VPS52YDR484W SPP1Q03012 353 aa7.28□□□□□ -1.24
VPS52YDR484W YJL171CP46992 396 aa7.24□□□□□ -1.25
VPS52YDR484W WSC3Q12215 556 aa7.23□□□□□ -1.25
VPS52YDR484W AIR2Q12476 344 aaKnown RBP7.19□□□□□ -1.26
VPS52YDR484W NSR1P27476 414 aaKnown RBP RIP-Chip data7.18□□□□□ -1.26not detected
VPS52YDR484W OXP1P28273 1286 aa7.18□□□□□ -1.26
VPS52YDR484W YAP5P40574 245 aa7.17□□□□□ -1.26
VPS52YDR484W PTP3P40048 928 aa7.14□□□□□ -1.27
VPS52YDR484W YIL055CP40523 627 aaKnown RBP7.14□□□□□ -1.27
VPS52YDR484W TIF11P38912 153 aaKnown RBP7.13□□□□□ -1.27
VPS52YDR484W FKH1P40466 484 aa7.12□□□□□ -1.27
VPS52YDR484W BBC1P47068 1157 aa7.09□□□□□ -1.27
VPS52YDR484W GTT3P39996 337 aa7.08□□□□□ -1.28
VPS52YDR484W BMT6Q12291 365 aa7.03□□□□□ -1.28
VPS52YDR484W LDB19Q12502 818 aa7.01□□□□□ -1.29
VPS52YDR484W ULI1P43604 169 aa7.01□□□□□ -1.29
VPS52YDR484W RSM7P47150 247 aa7.01□□□□□ -1.29
VPS52YDR484W AI2P03876 854 aa7□□□□□ -1.29
VPS52YDR484W IOC2Q12072 812 aa6.96□□□□□ -1.3
VPS52YDR484W PIB1Q06651 286 aa6.89□□□□□ -1.31
VPS52YDR484W YAH1Q12184 172 aaKnown RBP6.88□□□□□ -1.31
VPS52YDR484W EAP1P36041 632 aaKnown RBP6.84□□□□□ -1.31
VPS52YDR484W RTG1P32607 177 aa6.83□□□□□ -1.32
VPS52YDR484W NCR1Q12200 1170 aa6.83□□□□□ -1.32
VPS52YDR484W MSB4Q12317 492 aa6.82□□□□□ -1.32
VPS52YDR484W TRP5P00931 707 aaKnown RBP6.76□□□□□ -1.33
VPS52YDR484W SET4P42948 560 aa6.76□□□□□ -1.33
VPS52YDR484W YNL035CP53962 389 aaKnown RBP6.74□□□□□ -1.33
VPS52YDR484W YOL036WQ08206 761 aa6.74□□□□□ -1.33
VPS52YDR484W RGA2Q06407 1009 aa6.73□□□□□ -1.33
VPS52YDR484W SEC61P32915 480 aa6.72□□□□□ -1.33
VPS52YDR484W MRM1P25270 412 aa6.7□□□□□ -1.34
VPS52YDR484W TFG1P41895 735 aaPredicted RBP6.7□□□□□ -1.34
VPS52YDR484W YLR271WQ06152 274 aa6.68□□□□□ -1.34
VPS52YDR484W PSD2P53037 1138 aaKnown RBP6.66□□□□□ -1.34
VPS52YDR484W BCK2P33306 851 aa6.66□□□□□ -1.34
VPS52YDR484W SAP30P38429 201 aa6.62□□□□□ -1.35
VPS52YDR484W DBP1P24784 617 aaKnown RBP6.61□□□□□ -1.35
VPS52YDR484W YMR1P47147 688 aaKnown RBP RIP-Chip data6.61□□□□□ -1.35not detected
VPS52YDR484W CHL1P22516 861 aaPredicted RBP6.59□□□□□ -1.35
VPS52YDR484W YFR006WP43590 535 aa6.59□□□□□ -1.35
VPS52YDR484W VMA1P17255 1071 aaKnown RBP6.57□□□□□ -1.36
VPS52YDR484W SAM3Q08986 587 aa6.56□□□□□ -1.36
VPS52YDR484W VPS29P38759 282 aa6.56□□□□□ -1.36
VPS52YDR484W JIP4Q03361 876 aa6.55□□□□□ -1.36
VPS52YDR484W YDL129WQ07555 291 aa6.55□□□□□ -1.36
VPS52YDR484W DAN4P47179 1161 aa6.54□□□□□ -1.36
VPS52YDR484W PRE3P38624 215 aa6.53□□□□□ -1.36
VPS52YDR484W RTG3P38165 486 aa6.51□□□□□ -1.37
VPS52YDR484W STS1P38637 319 aa6.49□□□□□ -1.37
VPS52YDR484W GYP5Q12344 894 aa6.48□□□□□ -1.37
VPS52YDR484W ABP1P15891 592 aaKnown RBP6.46□□□□□ -1.37
VPS52YDR484W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.46□□□□□ -1.37not detected
VPS52YDR484W XDJ1P39102 459 aa6.45□□□□□ -1.38
VPS52YDR484W HTA1P04911 132 aaKnown RBP6.44□□□□□ -1.38
VPS52YDR484W HTA2P04912 132 aa6.44□□□□□ -1.38
VPS52YDR484W DCW1P36091 449 aa6.44□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms