RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W MTC1P47018 478 aaKnown RBP9.36□□□□□ -0.91
PRP42YDR235W FAP1P53971 965 aa9.34□□□□□ -0.91
PRP42YDR235W PRY3P47033 881 aa8.81□□□□□ -1
PRP42YDR235W AAD16Q02895 342 aa8.4□□□□□ -1.06
PRP42YDR235W PRI1P10363 409 aa8.34□□□□□ -1.07
PRP42YDR235W YCK3P39962 524 aa8.25□□□□□ -1.09
PRP42YDR235W HAA1Q12753 694 aaKnown RBP8.22□□□□□ -1.09
PRP42YDR235W DRS1P32892 752 aaKnown RBP7.99□□□□□ -1.13
PRP42YDR235W ISW2Q08773 1120 aa7.96□□□□□ -1.13
PRP42YDR235W RPG1P38249 964 aaKnown RBP7.9□□□□□ -1.14
PRP42YDR235W TSR3Q12094 313 aaKnown RBP7.85□□□□□ -1.15
PRP42YDR235W MRPL32P25348 183 aa7.56□□□□□ -1.2
PRP42YDR235W YGL015CP33199 130 aa7.48□□□□□ -1.21
PRP42YDR235W DIP2Q12220 943 aaPredicted RBP7.29□□□□□ -1.24
PRP42YDR235W RSE1Q04693 1361 aaKnown RBP7.27□□□□□ -1.25
PRP42YDR235W BUD31P25337 157 aaPredicted RBP7.18□□□□□ -1.26
PRP42YDR235W REB1P21538 810 aa7.14□□□□□ -1.27
PRP42YDR235W RPL17AP05740 184 aaKnown RBP7.09□□□□□ -1.28
PRP42YDR235W RPL17BP46990 184 aaKnown RBP7.09□□□□□ -1.28
PRP42YDR235W CDC27P38042 758 aa7.01□□□□□ -1.29
PRP42YDR235W UBP10P53874 792 aaPredicted RBP6.92□□□□□ -1.3
PRP42YDR235W MAP2P38174 421 aaKnown RBP6.9□□□□□ -1.31
PRP42YDR235W YKR023WP36119 530 aaKnown RBP6.81□□□□□ -1.32
PRP42YDR235W SIS1P25294 352 aaKnown RBP6.79□□□□□ -1.32
PRP42YDR235W AVT3P36062 692 aa6.79□□□□□ -1.32
PRP42YDR235W UBP9P39967 754 aa6.7□□□□□ -1.34
PRP42YDR235W SPT21P35209 758 aa6.69□□□□□ -1.34
PRP42YDR235W HOP09932 586 aa6.68□□□□□ -1.34
PRP42YDR235W TFC8Q12308 588 aa6.68□□□□□ -1.34
PRP42YDR235W DCD1P06773 312 aa6.67□□□□□ -1.34
PRP42YDR235W TIF4632P39936 914 aaKnown RBP6.67□□□□□ -1.34
PRP42YDR235W TGL3P40308 642 aa6.65□□□□□ -1.35
PRP42YDR235W SCY1P53009 804 aa6.62□□□□□ -1.35
PRP42YDR235W SLX5P32828 619 aaKnown RBP6.59□□□□□ -1.35
PRP42YDR235W BCH2P36122 765 aa6.43□□□□□ -1.38
PRP42YDR235W RIM101P33400 625 aa6.3□□□□□ -1.4
PRP42YDR235W YBL029C-AQ3E756 94 aa6.29□□□□□ -1.4
PRP42YDR235W BFR2Q06631 534 aaKnown RBP6.28□□□□□ -1.4
PRP42YDR235W MST1P07236 462 aa6.26□□□□□ -1.41
PRP42YDR235W YOR238WQ08634 303 aa6.22□□□□□ -1.41
PRP42YDR235W BDF1P35817 686 aa6.21□□□□□ -1.42
PRP42YDR235W EPS1P40557 701 aa6.21□□□□□ -1.42
PRP42YDR235W VNX1P42839 908 aa6.19□□□□□ -1.42
PRP42YDR235W SPP1Q03012 353 aa6.15□□□□□ -1.42
PRP42YDR235W YJL171CP46992 396 aa6.1□□□□□ -1.43
PRP42YDR235W NSR1P27476 414 aaKnown RBP RIP-Chip data6.1□□□□□ -1.43not detected
PRP42YDR235W WSC3Q12215 556 aa6.08□□□□□ -1.44
PRP42YDR235W AIR2Q12476 344 aaKnown RBP6.08□□□□□ -1.44
PRP42YDR235W OXP1P28273 1286 aa6.06□□□□□ -1.44
PRP42YDR235W YAP5P40574 245 aa6.06□□□□□ -1.44
PRP42YDR235W PTP3P40048 928 aa6.03□□□□□ -1.44
PRP42YDR235W FKH1P40466 484 aa6.03□□□□□ -1.44
PRP42YDR235W TIF11P38912 153 aaKnown RBP6.03□□□□□ -1.44
PRP42YDR235W YIL055CP40523 627 aaKnown RBP6.02□□□□□ -1.45
PRP42YDR235W BBC1P47068 1157 aa5.99□□□□□ -1.45
PRP42YDR235W RGA2Q06407 1009 aa5.99□□□□□ -1.45
PRP42YDR235W GTT3P39996 337 aa5.96□□□□□ -1.45
PRP42YDR235W LDB19Q12502 818 aa5.94□□□□□ -1.46
PRP42YDR235W BMT6Q12291 365 aa5.93□□□□□ -1.46
PRP42YDR235W AI2P03876 854 aa5.92□□□□□ -1.46
PRP42YDR235W ULI1P43604 169 aa5.91□□□□□ -1.46
PRP42YDR235W RSM7P47150 247 aa5.91□□□□□ -1.46
PRP42YDR235W IOC2Q12072 812 aa5.89□□□□□ -1.47
PRP42YDR235W PIB1Q06651 286 aa5.81□□□□□ -1.48
PRP42YDR235W YAH1Q12184 172 aaKnown RBP5.79□□□□□ -1.48
PRP42YDR235W EAP1P36041 632 aaKnown RBP5.77□□□□□ -1.48
PRP42YDR235W MSB4Q12317 492 aa5.77□□□□□ -1.48
PRP42YDR235W RTG1P32607 177 aa5.76□□□□□ -1.49
PRP42YDR235W NCR1Q12200 1170 aa5.75□□□□□ -1.49
PRP42YDR235W TRP5P00931 707 aaKnown RBP5.71□□□□□ -1.5
PRP42YDR235W SET4P42948 560 aa5.7□□□□□ -1.5
PRP42YDR235W YOL036WQ08206 761 aa5.7□□□□□ -1.5
PRP42YDR235W SEC61P32915 480 aa5.69□□□□□ -1.5
PRP42YDR235W YNL035CP53962 389 aaKnown RBP5.69□□□□□ -1.5
PRP42YDR235W MRM1P25270 412 aa5.66□□□□□ -1.5
PRP42YDR235W PSD2P53037 1138 aaKnown RBP5.65□□□□□ -1.51
PRP42YDR235W YLR271WQ06152 274 aa5.65□□□□□ -1.51
PRP42YDR235W TFG1P41895 735 aaPredicted RBP5.64□□□□□ -1.51
PRP42YDR235W BCK2P33306 851 aa5.63□□□□□ -1.51
PRP42YDR235W SAP30P38429 201 aa5.59□□□□□ -1.51
PRP42YDR235W YMR1P47147 688 aaKnown RBP RIP-Chip data5.59□□□□□ -1.52not detected
PRP42YDR235W DBP1P24784 617 aaKnown RBP5.58□□□□□ -1.52
PRP42YDR235W CHL1P22516 861 aaPredicted RBP5.57□□□□□ -1.52
PRP42YDR235W VMA1P17255 1071 aaKnown RBP5.56□□□□□ -1.52
PRP42YDR235W YFR006WP43590 535 aa5.56□□□□□ -1.52
PRP42YDR235W SAM3Q08986 587 aa5.56□□□□□ -1.52
PRP42YDR235W VPS29P38759 282 aa5.54□□□□□ -1.52
PRP42YDR235W DAN4P47179 1161 aa5.54□□□□□ -1.52
PRP42YDR235W JIP4Q03361 876 aa5.54□□□□□ -1.52
PRP42YDR235W YDL129WQ07555 291 aa5.54□□□□□ -1.52
PRP42YDR235W PRE3P38624 215 aa5.52□□□□□ -1.53
PRP42YDR235W STS1P38637 319 aa5.5□□□□□ -1.53
PRP42YDR235W RTG3P38165 486 aa5.49□□□□□ -1.53
PRP42YDR235W ABP1P15891 592 aaKnown RBP5.48□□□□□ -1.53
PRP42YDR235W GYP5Q12344 894 aa5.47□□□□□ -1.53
PRP42YDR235W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.46□□□□□ -1.54not detected
PRP42YDR235W XDJ1P39102 459 aa5.45□□□□□ -1.54
PRP42YDR235W HTA1P04911 132 aaKnown RBP5.45□□□□□ -1.54
PRP42YDR235W HTA2P04912 132 aa5.45□□□□□ -1.54
PRP42YDR235W VRP1P37370 817 aa5.45□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms