RNA–Protein interactions for RNA: YBR235W

VHC1, Transcript of Vacuolar membrane cation-chloride cotransporter (CCC), yeast

Gene VHC1, Length 3,363 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHC1	YBR235W	RQC2	Q12532	1038 aa	Known RBP	7.44	□□□□□ -1.22
VHC1	YBR235W	BFR2	Q06631	534 aa	Known RBP	7.39	□□□□□ -1.23
VHC1	YBR235W	NOP2	P40991	618 aa	Known RBP	6.83	□□□□□ -1.32
VHC1	YBR235W	EBP2	P36049	427 aa	Known RBP	6.68	□□□□□ -1.34
VHC1	YBR235W	CAB3	P36076	571 aa		6.67	□□□□□ -1.34
VHC1	YBR235W	URN1	Q06525	465 aa	Known RBP	6.64	□□□□□ -1.35
VHC1	YBR235W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	6.6	□□□□□ -1.35	not detected
VHC1	YBR235W	SIS2	P36024	562 aa		6.55	□□□□□ -1.36
VHC1	YBR235W	AVT3	P36062	692 aa		6.54	□□□□□ -1.36
VHC1	YBR235W	YPR148C	Q06523	435 aa		6.49	□□□□□ -1.37
VHC1	YBR235W	YFR016C	P43597	1233 aa	Known RBP	6.38	□□□□□ -1.39
VHC1	YBR235W	TAF7	Q05021	590 aa		6.34	□□□□□ -1.39
VHC1	YBR235W	CWC22	P53333	577 aa	Known RBP	6.25	□□□□□ -1.41
VHC1	YBR235W	MTC1	P47018	478 aa	Known RBP	6.17	□□□□□ -1.42
VHC1	YBR235W	RPS0B	P46654	252 aa	Known RBP	6.17	□□□□□ -1.42
VHC1	YBR235W	LEO1	P38439	464 aa		6.14	□□□□□ -1.43
VHC1	YBR235W	KRI1	P42846	591 aa	Known RBP	6.14	□□□□□ -1.43
VHC1	YBR235W	RSE1	Q04693	1361 aa	Known RBP	6.13	□□□□□ -1.43
VHC1	YBR235W	DIP2	Q12220	943 aa	Predicted RBP	6.13	□□□□□ -1.43
VHC1	YBR235W	AIM44	Q99299	758 aa		6.13	□□□□□ -1.43
VHC1	YBR235W	ENV11	P53246	860 aa		6.06	□□□□□ -1.44
VHC1	YBR235W	TCB2	P48231	1178 aa		6.04	□□□□□ -1.44
VHC1	YBR235W	MNN4	P36044	1178 aa		6.03	□□□□□ -1.44
VHC1	YBR235W	SPT21	P35209	758 aa		6.01	□□□□□ -1.45
VHC1	YBR235W	SKI3	P17883	1432 aa	Known RBP	6.01	□□□□□ -1.45
VHC1	YBR235W	ENP1	P38333	483 aa	Known RBP	6	□□□□□ -1.45
VHC1	YBR235W	PSH1	Q12161	406 aa		6	□□□□□ -1.45
VHC1	YBR235W	SEC3	P33332	1336 aa	Known RBP	5.98	□□□□□ -1.45
VHC1	YBR235W	DEF1	P35732	738 aa	Known RBP	5.97	□□□□□ -1.45
VHC1	YBR235W	CLC1	P17891	233 aa		5.96	□□□□□ -1.46
VHC1	YBR235W	SPT7	P35177	1332 aa		5.94	□□□□□ -1.46
VHC1	YBR235W	SPA2	P23201	1466 aa	Known RBP	5.94	□□□□□ -1.46
VHC1	YBR235W	FPR3	P38911	411 aa	Known RBP	5.93	□□□□□ -1.46
VHC1	YBR235W	YRB30	P53107	440 aa	Predicted RBP	5.93	□□□□□ -1.46
VHC1	YBR235W	DRS1	P32892	752 aa	Known RBP	5.93	□□□□□ -1.46
VHC1	YBR235W	TFA1	P36100	482 aa		5.91	□□□□□ -1.46
VHC1	YBR235W	NUG1	P40010	520 aa	Known RBP	5.91	□□□□□ -1.46
VHC1	YBR235W	IME2	P32581	645 aa		5.91	□□□□□ -1.46
VHC1	YBR235W	SSN2	P38931	1420 aa		5.91	□□□□□ -1.46
VHC1	YBR235W	YGR130C	P53278	816 aa		5.91	□□□□□ -1.46
VHC1	YBR235W	RNA1	P11745	407 aa	Known RBP	5.9	□□□□□ -1.46
VHC1	YBR235W	SAS10	Q12136	610 aa	Predicted RBP	5.9	□□□□□ -1.46
VHC1	YBR235W	IOC4	Q04213	475 aa		5.89	□□□□□ -1.47
VHC1	YBR235W	FPR4	Q06205	392 aa	Predicted RBP	5.88	□□□□□ -1.47
VHC1	YBR235W	FUN12	P39730	1002 aa	Known RBP	5.87	□□□□□ -1.47
VHC1	YBR235W	RLP24	Q07915	199 aa	Known RBP	5.87	□□□□□ -1.47
VHC1	YBR235W	SWE1	P32944	819 aa		5.86	□□□□□ -1.47
VHC1	YBR235W	LEU3	P08638	886 aa		5.85	□□□□□ -1.47
VHC1	YBR235W	SPT2	P06843	333 aa	Predicted RBP	5.85	□□□□□ -1.47
VHC1	YBR235W	TCB3	Q03640	1545 aa	Known RBP	5.84	□□□□□ -1.47
VHC1	YBR235W	NOP53	Q12080	455 aa	Known RBP	5.84	□□□□□ -1.47
VHC1	YBR235W	PRS1	P32895	427 aa	Known RBP	5.84	□□□□□ -1.48
VHC1	YBR235W	SGS1	P35187	1447 aa		5.83	□□□□□ -1.48
VHC1	YBR235W	CFT1	Q06632	1357 aa	Known RBP	5.83	□□□□□ -1.48
VHC1	YBR235W	IFH1	P39520	1085 aa		5.82	□□□□□ -1.48
VHC1	YBR235W	QCR6	P00127	147 aa		5.82	□□□□□ -1.48
VHC1	YBR235W	NAP1	P25293	417 aa	Known RBP	5.82	□□□□□ -1.48
VHC1	YBR235W	EAF7	P53911	425 aa	Known RBP	5.8	□□□□□ -1.48
VHC1	YBR235W	OPY1	P38271	328 aa		5.8	□□□□□ -1.48
VHC1	YBR235W	GRX3	Q03835	250 aa		5.79	□□□□□ -1.48
VHC1	YBR235W	POL5	P39985	1022 aa	Known RBP	5.78	□□□□□ -1.48
VHC1	YBR235W	STH1	P32597	1359 aa		5.78	□□□□□ -1.48
VHC1	YBR235W	DOS2	P54858	310 aa		5.77	□□□□□ -1.49
VHC1	YBR235W	RLF2	Q12495	606 aa		5.77	□□□□□ -1.49
VHC1	YBR235W	RAD26	P40352	1085 aa		5.77	□□□□□ -1.49
VHC1	YBR235W	RPC31	P17890	251 aa		5.76	□□□□□ -1.49
VHC1	YBR235W	SPC110	P32380	944 aa		5.74	□□□□□ -1.49
VHC1	YBR235W	ETT1	Q08421	412 aa	Known RBP	5.72	□□□□□ -1.49
VHC1	YBR235W	PAF1	P38351	445 aa		5.71	□□□□□ -1.5
VHC1	YBR235W	YNL011C	P53980	444 aa		5.71	□□□□□ -1.5
VHC1	YBR235W	NMD2	P38798	1089 aa	Known RBP	5.7	□□□□□ -1.5
VHC1	YBR235W	CTR9	P89105	1077 aa		5.7	□□□□□ -1.5
VHC1	YBR235W	MSH3	P25336	1018 aa		5.7	□□□□□ -1.5
VHC1	YBR235W	SNF7	P39929	240 aa	Known RBP	5.7	□□□□□ -1.5
VHC1	YBR235W	DJP1	P40564	432 aa		5.7	□□□□□ -1.5
VHC1	YBR235W	YPP1	P46951	817 aa		5.69	□□□□□ -1.5
VHC1	YBR235W	YTA7	P40340	1379 aa		5.69	□□□□□ -1.5
VHC1	YBR235W	CLB5	P30283	435 aa		5.69	□□□□□ -1.5
VHC1	YBR235W	ECM16	Q04217	1267 aa	Known RBP	5.67	□□□□□ -1.5
VHC1	YBR235W	RPN1	P38764	993 aa	Known RBP	5.67	□□□□□ -1.5
VHC1	YBR235W	MMS22	Q06164	1454 aa		5.65	□□□□□ -1.5
VHC1	YBR235W	SIC1	P38634	284 aa		5.65	□□□□□ -1.5
VHC1	YBR235W	INO80	P53115	1489 aa		5.65	□□□□□ -1.51
VHC1	YBR235W	HSP82	P02829	709 aa	Known RBP	5.65	□□□□□ -1.51
VHC1	YBR235W	RIX1	P38883	763 aa	Predicted RBP	5.65	□□□□□ -1.51
VHC1	YBR235W	SLN1	P39928	1220 aa	Predicted RBP	5.65	□□□□□ -1.51
VHC1	YBR235W	RTT106	P40161	455 aa		5.65	□□□□□ -1.51
VHC1	YBR235W	ROX1	P25042	368 aa		5.64	□□□□□ -1.51
VHC1	YBR235W	PAP2	P53632	584 aa	Known RBP	5.64	□□□□□ -1.51
VHC1	YBR235W	NOP58	Q12499	511 aa	Known RBP	5.64	□□□□□ -1.51
VHC1	YBR235W	NNF2	P53253	936 aa		5.64	□□□□□ -1.51
VHC1	YBR235W	UFD4	P33202	1483 aa		5.63	□□□□□ -1.51
VHC1	YBR235W	DSN1	P40568	576 aa		5.63	□□□□□ -1.51
VHC1	YBR235W	VPS4	P52917	437 aa		5.63	□□□□□ -1.51
VHC1	YBR235W	MSH4	P40965	878 aa	Predicted RBP	5.62	□□□□□ -1.51
VHC1	YBR235W	PIL1	P53252	339 aa	Known RBP	5.62	□□□□□ -1.51
VHC1	YBR235W	XRN1	P22147	1528 aa	Known RBP	5.62	□□□□□ -1.51
VHC1	YBR235W	TIF4632	P39936	914 aa	Known RBP	5.61	□□□□□ -1.51
VHC1	YBR235W	PSD2	P53037	1138 aa	Known RBP	5.61	□□□□□ -1.51
VHC1	YBR235W	SMC3	P47037	1230 aa		5.61	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms