RNA–Protein interactions for RNA: ENST00000616236.1

RFC3-203, Transcript of replication factor C subunit 3, humanhuman

TSL 3

Gene RFC3, Length 612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3-203ENST00000616236 CHIC1Q5VXU3 224 aa17.04■□□□□ 0.32
RFC3-203ENST00000616236 AEBP2Q6ZN18 517 aaPredicted RBP16.68■□□□□ 0.26
RFC3-203ENST00000616236 PHF23Q9BUL5 403 aaPredicted RBP15.12■□□□□ 0.01
RFC3-203ENST00000616236 PLPPR3Q6T4P5 718 aa14.19□□□□□ -0.14
RFC3-203ENST00000616236 SENP3Q9H4L4 574 aaPredicted RBP13.95□□□□□ -0.18
RFC3-203ENST00000616236 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
RFC3-203ENST00000616236 ADRA2BP18089 450 aa13.34□□□□□ -0.27
RFC3-203ENST00000616236 KCNA4P22459 653 aa13.31□□□□□ -0.28
RFC3-203ENST00000616236 PPP6R1Q9UPN7 881 aa13.09□□□□□ -0.31
RFC3-203ENST00000616236 FOXD1Q16676 465 aa12.9□□□□□ -0.34
RFC3-203ENST00000616236 CSRNP3Q8WYN3 585 aa12.87□□□□□ -0.35
RFC3-203ENST00000616236 SLC4A1APQ9BWU0 796 aaKnown RBP12.8□□□□□ -0.36
RFC3-203ENST00000616236 PPP4R3CPQ6ZMV5 832 aa12.64□□□□□ -0.39
RFC3-203ENST00000616236 NCBP3Q53F19 620 aaKnown RBP12.51□□□□□ -0.41
RFC3-203ENST00000616236 NPM3O75607 178 aaKnown RBP12.37□□□□□ -0.43
RFC3-203ENST00000616236 PIAS4Q8N2W9 510 aaPredicted RBP12.35□□□□□ -0.43
RFC3-203ENST00000616236 ZBTB22O15209 634 aa12.27□□□□□ -0.45
RFC3-203ENST00000616236 SLC24A1O60721 1099 aa12.18□□□□□ -0.46
RFC3-203ENST00000616236 CNKSR2Q8WXI2 1034 aa12.07□□□□□ -0.48
RFC3-203ENST00000616236 RTN4Q9NQC3 1192 aaKnown RBP12.02□□□□□ -0.49
RFC3-203ENST00000616236 FOXD4L1Q9NU39 408 aa11.97□□□□□ -0.49
RFC3-203ENST00000616236 AMER1Q5JTC6 1135 aaPredicted RBP11.96□□□□□ -0.49
RFC3-203ENST00000616236 SCAF1Q9H7N4 1312 aaKnown RBP11.92□□□□□ -0.5
RFC3-203ENST00000616236 MSH5O43196 834 aa11.85□□□□□ -0.51
RFC3-203ENST00000616236 DNAJC5BQ9UF47 199 aa11.81□□□□□ -0.52
RFC3-203ENST00000616236 MAPK8IP2Q13387 824 aaPredicted RBP11.68□□□□□ -0.54
RFC3-203ENST00000616236 RNF216Q9NWF9 866 aaPredicted RBP11.63□□□□□ -0.55
RFC3-203ENST00000616236 FKBP8Q14318 412 aa11.58□□□□□ -0.56
RFC3-203ENST00000616236 POTEDQ86YR6 584 aa11.57□□□□□ -0.56
RFC3-203ENST00000616236 SLC4A2P04920 1241 aa11.49□□□□□ -0.57
RFC3-203ENST00000616236 ATXN8OSP0DMR3 200 aa11.45□□□□□ -0.58
RFC3-203ENST00000616236 MYCNP04198 464 aaPredicted RBP11.37□□□□□ -0.59
RFC3-203ENST00000616236 HOXD11P31277 338 aaPredicted RBP11.36□□□□□ -0.59
RFC3-203ENST00000616236 DMRT2Q9Y5R5 561 aa11.28□□□□□ -0.6
RFC3-203ENST00000616236 ATF5Q9Y2D1 282 aaPredicted RBP11.08□□□□□ -0.64
RFC3-203ENST00000616236 PLCB2Q00722 1185 aa11.02□□□□□ -0.65
RFC3-203ENST00000616236 HAP1P54257 671 aaPredicted RBP10.9□□□□□ -0.66
RFC3-203ENST00000616236 SAMD1Q6SPF0 538 aaPredicted RBP10.88□□□□□ -0.67
RFC3-203ENST00000616236 FBXO3Q9UK99 471 aa10.88□□□□□ -0.67
RFC3-203ENST00000616236 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.86□□□□□ -0.67
RFC3-203ENST00000616236 HNRNPUL2Q1KMD3 747 aaKnown RBP10.86□□□□□ -0.67
RFC3-203ENST00000616236 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.86□□□□□ -0.679e-7■■■□□ 16.5
RFC3-203ENST00000616236 PRKCSHP14314 528 aaPredicted RBP10.83□□□□□ -0.68
RFC3-203ENST00000616236 BCANQ96GW7 911 aa10.81□□□□□ -0.68
RFC3-203ENST00000616236 DCAF8L1A6NGE4 600 aa10.8□□□□□ -0.68
RFC3-203ENST00000616236 DCAF8L2P0C7V8 631 aa10.79□□□□□ -0.68
RFC3-203ENST00000616236 U3KPZ7 1027 aaPredicted RBP10.78□□□□□ -0.68
RFC3-203ENST00000616236 SPDYE4A6NLX3 237 aa10.76□□□□□ -0.69
RFC3-203ENST00000616236 ZNF219Q9P2Y4 722 aaPredicted RBP10.76□□□□□ -0.69
RFC3-203ENST00000616236 VASPP50552 380 aaPredicted RBP10.74□□□□□ -0.69
RFC3-203ENST00000616236 TAOK2Q9UL54 1235 aa10.74□□□□□ -0.69
RFC3-203ENST00000616236 VSIG10Q8N0Z9 540 aa10.72□□□□□ -0.69
RFC3-203ENST00000616236 IFNLR1Q8IU57 520 aaPredicted RBP10.69□□□□□ -0.7
RFC3-203ENST00000616236 PROM2Q8N271 834 aa10.68□□□□□ -0.7
RFC3-203ENST00000616236 PKD2Q13563 968 aa10.65□□□□□ -0.7
RFC3-203ENST00000616236 MKRN4PQ13434 485 aaPredicted RBP10.63□□□□□ -0.71
RFC3-203ENST00000616236 TPRNQ4KMQ1 711 aa10.58□□□□□ -0.72
RFC3-203ENST00000616236 KDM2AQ9Y2K7 1162 aa10.56□□□□□ -0.72
RFC3-203ENST00000616236 APLP2Q06481 763 aa10.54□□□□□ -0.72
RFC3-203ENST00000616236 FBLN2P98095 1184 aa10.52□□□□□ -0.73
RFC3-203ENST00000616236 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.52□□□□□ -0.73
RFC3-203ENST00000616236 BBXQ8WY36 941 aaPredicted RBP10.51□□□□□ -0.73
RFC3-203ENST00000616236 PAXIP1Q6ZW49 1069 aaPredicted RBP10.49□□□□□ -0.73
RFC3-203ENST00000616236 NPM1P06748 294 aaKnown RBP eCLIP10.46□□□□□ -0.73
RFC3-203ENST00000616236 CFAP44Q96MT7 982 aa10.46□□□□□ -0.73
RFC3-203ENST00000616236 ECM2O94769 699 aaPredicted RBP10.42□□□□□ -0.74
RFC3-203ENST00000616236 SPOCK2Q92563 424 aa10.4□□□□□ -0.74
RFC3-203ENST00000616236 KLHL34Q8N239 644 aa10.39□□□□□ -0.75
RFC3-203ENST00000616236 TSHZ2Q9NRE2 1034 aa10.35□□□□□ -0.75
RFC3-203ENST00000616236 SPRYD3Q8NCJ5 442 aa10.34□□□□□ -0.75
RFC3-203ENST00000616236 POLA2Q14181 598 aa10.33□□□□□ -0.76
RFC3-203ENST00000616236 TRHP20396 242 aaPredicted RBP10.32□□□□□ -0.76
RFC3-203ENST00000616236 RGL2O15211 777 aa10.31□□□□□ -0.76
RFC3-203ENST00000616236 SPINK5Q9NQ38 1064 aaPredicted RBP10.26□□□□□ -0.77
RFC3-203ENST00000616236 CHGAP10645 457 aaKnown RBP10.2□□□□□ -0.78
RFC3-203ENST00000616236 NBR1Q14596 966 aa10.2□□□□□ -0.78
RFC3-203ENST00000616236 PLCD3Q8N3E9 789 aa10.2□□□□□ -0.78
RFC3-203ENST00000616236 STAG3Q9UJ98 1225 aa10.2□□□□□ -0.78
RFC3-203ENST00000616236 TIMELESSQ9UNS1 1208 aa10.18□□□□□ -0.78
RFC3-203ENST00000616236 CAPN15O75808 1086 aa10.16□□□□□ -0.78
RFC3-203ENST00000616236 DNAJC5Q9H3Z4 198 aa10.16□□□□□ -0.78
RFC3-203ENST00000616236 ZBTB12Q9Y330 459 aaPredicted RBP10.16□□□□□ -0.78
RFC3-203ENST00000616236 TULP1O00294 542 aaPredicted RBP10.15□□□□□ -0.78
RFC3-203ENST00000616236 MIER1Q8N108 512 aa10.12□□□□□ -0.79
RFC3-203ENST00000616236 CIZ1Q9ULV3 898 aaPredicted RBP10.12□□□□□ -0.79
RFC3-203ENST00000616236 ZNF692Q9BU19 519 aaPredicted RBP10.1□□□□□ -0.79
RFC3-203ENST00000616236 RNF39Q9H2S5 420 aa10.1□□□□□ -0.79
RFC3-203ENST00000616236 GTF3C3Q9Y5Q9 886 aa10.09□□□□□ -0.79
RFC3-203ENST00000616236 CACNB1Q02641 598 aaPredicted RBP10.07□□□□□ -0.8
RFC3-203ENST00000616236 ABCB7O75027 752 aa10.06□□□□□ -0.8
RFC3-203ENST00000616236 HS6ST3Q8IZP7 471 aa10.04□□□□□ -0.8
RFC3-203ENST00000616236 PABPN1Q86U42 306 aaKnown RBP eCLIP10□□□□□ -0.81
RFC3-203ENST00000616236 SSUH2Q9Y2M2 353 aa10□□□□□ -0.81
RFC3-203ENST00000616236 TRIM41Q8WV44 630 aa9.99□□□□□ -0.81
RFC3-203ENST00000616236 C1QBPQ07021 282 aaKnown RBP9.98□□□□□ -0.81
RFC3-203ENST00000616236 SPDYE2BA6NHP3 402 aa9.97□□□□□ -0.81
RFC3-203ENST00000616236 SPDYE6P0CI01 402 aa9.97□□□□□ -0.81
RFC3-203ENST00000616236 SPDYE2Q495Y8 402 aa9.97□□□□□ -0.81
RFC3-203ENST00000616236 ZBTB47Q9UFB7 747 aaPredicted RBP9.97□□□□□ -0.81
RFC3-203ENST00000616236 PLEKHG5O94827 1062 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms