RNA–Protein interactions for RNA: ENST00000557827.5

ZEB1-210, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 1 (best)

Gene ZEB1, Length 877 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-210ENST00000557827 AEBP2Q6ZN18 517 aaPredicted RBP23.32■■□□□ 1.32
ZEB1-210ENST00000557827 CHIC1Q5VXU3 224 aa23.23■■□□□ 1.31
ZEB1-210ENST00000557827 PHF23Q9BUL5 403 aaPredicted RBP20.6■□□□□ 0.89
ZEB1-210ENST00000557827 SENP3Q9H4L4 574 aaPredicted RBP20.03■□□□□ 0.8
ZEB1-210ENST00000557827 PLPPR3Q6T4P5 718 aa19.35■□□□□ 0.69
ZEB1-210ENST00000557827 FOXD1Q16676 465 aa18.51■□□□□ 0.55
ZEB1-210ENST00000557827 EHMT2Q96KQ7 1210 aa18.27■□□□□ 0.52
ZEB1-210ENST00000557827 ADRA2BP18089 450 aa18.16■□□□□ 0.5
ZEB1-210ENST00000557827 KCNA4P22459 653 aa18.13■□□□□ 0.49
ZEB1-210ENST00000557827 PPP6R1Q9UPN7 881 aa17.82■□□□□ 0.44
ZEB1-210ENST00000557827 CSRNP3Q8WYN3 585 aa17.55■□□□□ 0.4
ZEB1-210ENST00000557827 SLC4A1APQ9BWU0 796 aaKnown RBP17.45■□□□□ 0.38
ZEB1-210ENST00000557827 PIAS4Q8N2W9 510 aaPredicted RBP17.43■□□□□ 0.38
ZEB1-210ENST00000557827 MSH5O43196 834 aa17.35■□□□□ 0.37
ZEB1-210ENST00000557827 PPP4R3CPQ6ZMV5 832 aa17.23■□□□□ 0.35
ZEB1-210ENST00000557827 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
ZEB1-210ENST00000557827 NPM3O75607 178 aaKnown RBP16.86■□□□□ 0.29
ZEB1-210ENST00000557827 ZBTB22O15209 634 aa16.72■□□□□ 0.27
ZEB1-210ENST00000557827 SLC24A1O60721 1099 aa16.63■□□□□ 0.25
ZEB1-210ENST00000557827 CNKSR2Q8WXI2 1034 aa16.47■□□□□ 0.23
ZEB1-210ENST00000557827 SCAF1Q9H7N4 1312 aaKnown RBP16.46■□□□□ 0.23
ZEB1-210ENST00000557827 RTN4Q9NQC3 1192 aaKnown RBP16.4■□□□□ 0.22
ZEB1-210ENST00000557827 AMER1Q5JTC6 1135 aaPredicted RBP16.34■□□□□ 0.21
ZEB1-210ENST00000557827 FOXD4L1Q9NU39 408 aa16.32■□□□□ 0.2
ZEB1-210ENST00000557827 POTEDQ86YR6 584 aa16.29■□□□□ 0.2
ZEB1-210ENST00000557827 DNAJC5BQ9UF47 199 aa16.16■□□□□ 0.18
ZEB1-210ENST00000557827 MAPK8IP2Q13387 824 aaPredicted RBP15.93■□□□□ 0.14
ZEB1-210ENST00000557827 DMRT2Q9Y5R5 561 aa15.88■□□□□ 0.13
ZEB1-210ENST00000557827 RNF216Q9NWF9 866 aaPredicted RBP15.86■□□□□ 0.13
ZEB1-210ENST00000557827 FKBP8Q14318 412 aa15.77■□□□□ 0.12
ZEB1-210ENST00000557827 SLC4A2P04920 1241 aa15.66■□□□□ 0.1
ZEB1-210ENST00000557827 ATXN8OSP0DMR3 200 aa15.64■□□□□ 0.09
ZEB1-210ENST00000557827 MYCNP04198 464 aaPredicted RBP15.51■□□□□ 0.07
ZEB1-210ENST00000557827 HOXD11P31277 338 aaPredicted RBP15.5■□□□□ 0.07
ZEB1-210ENST00000557827 DCAF8L1A6NGE4 600 aa15.23■□□□□ 0.03
ZEB1-210ENST00000557827 ATF5Q9Y2D1 282 aaPredicted RBP15.09■□□□□ 0.01
ZEB1-210ENST00000557827 PLCB2Q00722 1185 aa15.05■□□□□ -0
ZEB1-210ENST00000557827 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.99□□□□□ -0.01
ZEB1-210ENST00000557827 HNRNPUL2Q1KMD3 747 aaKnown RBP14.99□□□□□ -0.01
ZEB1-210ENST00000557827 SAMD1Q6SPF0 538 aaPredicted RBP14.89□□□□□ -0.03
ZEB1-210ENST00000557827 FBXO3Q9UK99 471 aa14.87□□□□□ -0.03
ZEB1-210ENST00000557827 HAP1P54257 671 aaPredicted RBP14.85□□□□□ -0.03
ZEB1-210ENST00000557827 BCANQ96GW7 911 aa14.79□□□□□ -0.04
ZEB1-210ENST00000557827 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.79□□□□□ -0.04
ZEB1-210ENST00000557827 RNF39Q9H2S5 420 aa14.76□□□□□ -0.05
ZEB1-210ENST00000557827 PRKCSHP14314 528 aaPredicted RBP14.75□□□□□ -0.05
ZEB1-210ENST00000557827 APLP2Q06481 763 aa14.69□□□□□ -0.06
ZEB1-210ENST00000557827 SPDYE4A6NLX3 237 aa14.67□□□□□ -0.06
ZEB1-210ENST00000557827 DCAF8L2P0C7V8 631 aa14.67□□□□□ -0.06
ZEB1-210ENST00000557827 ZNF219Q9P2Y4 722 aaPredicted RBP14.67□□□□□ -0.06
ZEB1-210ENST00000557827 U3KPZ7 1027 aaPredicted RBP14.67□□□□□ -0.06
ZEB1-210ENST00000557827 CACNB1Q02641 598 aaPredicted RBP14.66□□□□□ -0.06
ZEB1-210ENST00000557827 TAOK2Q9UL54 1235 aa14.66□□□□□ -0.06
ZEB1-210ENST00000557827 VASPP50552 380 aaPredicted RBP14.65□□□□□ -0.06
ZEB1-210ENST00000557827 VSIG10Q8N0Z9 540 aa14.65□□□□□ -0.06
ZEB1-210ENST00000557827 C1QBPQ07021 282 aaKnown RBP14.63□□□□□ -0.07
ZEB1-210ENST00000557827 PROM2Q8N271 834 aa14.59□□□□□ -0.07
ZEB1-210ENST00000557827 IFNLR1Q8IU57 520 aaPredicted RBP14.58□□□□□ -0.08
ZEB1-210ENST00000557827 PKD2Q13563 968 aa14.53□□□□□ -0.08
ZEB1-210ENST00000557827 MKRN4PQ13434 485 aaPredicted RBP14.48□□□□□ -0.09
ZEB1-210ENST00000557827 TPRNQ4KMQ1 711 aa14.43□□□□□ -0.1
ZEB1-210ENST00000557827 KDM2AQ9Y2K7 1162 aa14.41□□□□□ -0.1
ZEB1-210ENST00000557827 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.37□□□□□ -0.11
ZEB1-210ENST00000557827 BBXQ8WY36 941 aaPredicted RBP14.36□□□□□ -0.11
ZEB1-210ENST00000557827 FBLN2P98095 1184 aa14.33□□□□□ -0.12
ZEB1-210ENST00000557827 PAXIP1Q6ZW49 1069 aaPredicted RBP14.3□□□□□ -0.12
ZEB1-210ENST00000557827 NPM1P06748 294 aaKnown RBP eCLIP14.26□□□□□ -0.13
ZEB1-210ENST00000557827 CFAP44Q96MT7 982 aa14.25□□□□□ -0.13
ZEB1-210ENST00000557827 ECM2O94769 699 aaPredicted RBP14.21□□□□□ -0.13
ZEB1-210ENST00000557827 SPOCK2Q92563 424 aa14.18□□□□□ -0.14
ZEB1-210ENST00000557827 KLHL34Q8N239 644 aa14.15□□□□□ -0.14
ZEB1-210ENST00000557827 SPRYD3Q8NCJ5 442 aa14.11□□□□□ -0.15
ZEB1-210ENST00000557827 TSHZ2Q9NRE2 1034 aa14.11□□□□□ -0.15
ZEB1-210ENST00000557827 CAPN15O75808 1086 aa14.1□□□□□ -0.15
ZEB1-210ENST00000557827 POLA2Q14181 598 aa14.08□□□□□ -0.16
ZEB1-210ENST00000557827 RGL2O15211 777 aa14.05□□□□□ -0.16
ZEB1-210ENST00000557827 SPINK5Q9NQ38 1064 aaPredicted RBP14.04□□□□□ -0.16
ZEB1-210ENST00000557827 ZBTB12Q9Y330 459 aaPredicted RBP14.04□□□□□ -0.16
ZEB1-210ENST00000557827 TRHP20396 242 aaPredicted RBP14.03□□□□□ -0.16
ZEB1-210ENST00000557827 STAG3Q9UJ98 1225 aa13.93□□□□□ -0.18
ZEB1-210ENST00000557827 NBR1Q14596 966 aa13.91□□□□□ -0.18
ZEB1-210ENST00000557827 CHGAP10645 457 aaKnown RBP13.9□□□□□ -0.18
ZEB1-210ENST00000557827 DNAJC5Q9H3Z4 198 aa13.9□□□□□ -0.18
ZEB1-210ENST00000557827 DSG3P32926 999 aa13.89□□□□□ -0.19
ZEB1-210ENST00000557827 PLCD3Q8N3E9 789 aa13.89□□□□□ -0.19
ZEB1-210ENST00000557827 TIMELESSQ9UNS1 1208 aa13.89□□□□□ -0.19
ZEB1-210ENST00000557827 TULP1O00294 542 aaPredicted RBP13.84□□□□□ -0.19
ZEB1-210ENST00000557827 MIER1Q8N108 512 aa13.81□□□□□ -0.2
ZEB1-210ENST00000557827 GTF3C3Q9Y5Q9 886 aa13.79□□□□□ -0.2
ZEB1-210ENST00000557827 CIZ1Q9ULV3 898 aaPredicted RBP13.78□□□□□ -0.2
ZEB1-210ENST00000557827 ZNF692Q9BU19 519 aaPredicted RBP13.76□□□□□ -0.21
ZEB1-210ENST00000557827 ABCB7O75027 752 aa13.73□□□□□ -0.21
ZEB1-210ENST00000557827 HS6ST3Q8IZP7 471 aa13.7□□□□□ -0.22
ZEB1-210ENST00000557827 ERICH6Q7L0X2 663 aa13.65□□□□□ -0.22
ZEB1-210ENST00000557827 TRIM41Q8WV44 630 aa13.65□□□□□ -0.22
ZEB1-210ENST00000557827 ARXQ96QS3 562 aa13.65□□□□□ -0.22
ZEB1-210ENST00000557827 ZBTB47Q9UFB7 747 aaPredicted RBP13.63□□□□□ -0.23
ZEB1-210ENST00000557827 SSUH2Q9Y2M2 353 aa13.63□□□□□ -0.23
ZEB1-210ENST00000557827 SPDYE2BA6NHP3 402 aa13.62□□□□□ -0.23
ZEB1-210ENST00000557827 PLEKHG5O94827 1062 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms