RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 NISCHQ9Y2I1 1504 aa27.11■■□□□ 1.93
CPSF7-223ENST00000544669 CCDC180Q9P1Z9 1646 aa23.23■■□□□ 1.31
CPSF7-223ENST00000544669 ZCCHC6Q5VYS8 1495 aaKnown RBP22.92■■□□□ 1.26
CPSF7-223ENST00000544669 SHROOM4Q9ULL8 1493 aa22.62■■□□□ 1.21
CPSF7-223ENST00000544669 DCAF1Q9Y4B6 1507 aa22.51■■□□□ 1.19
CPSF7-223ENST00000544669 SUPT5HO00267 1087 aaKnown RBP22.29■■□□□ 1.16
CPSF7-223ENST00000544669 DCAF8L2P0C7V8 631 aa22.17■■□□□ 1.14
CPSF7-223ENST00000544669 MYO15BQ96JP2 1530 aa21.96■■□□□ 1.11
CPSF7-223ENST00000544669 CHIC1Q5VXU3 224 aa21.8■■□□□ 1.08
CPSF7-223ENST00000544669 ABCC9O60706 1549 aa21.59■■□□□ 1.05
CPSF7-223ENST00000544669 NACADO15069 1562 aa21.51■■□□□ 1.03
CPSF7-223ENST00000544669 SCRIBQ14160 1630 aa21.39■■□□□ 1.01
CPSF7-223ENST00000544669 RSF1Q96T23 1441 aaPredicted RBP21.36■■□□□ 1.01
CPSF7-223ENST00000544669 RB1CC1Q8TDY2 1594 aa21.23■□□□□ 0.99
CPSF7-223ENST00000544669 HRCP23327 699 aa21.09■□□□□ 0.97
CPSF7-223ENST00000544669 TRIM41Q8WV44 630 aa21■□□□□ 0.95
CPSF7-223ENST00000544669 PCGF6Q9BYE7 350 aa20.95■□□□□ 0.94
CPSF7-223ENST00000544669 LOC105371045A0A1W2PR82 267 aa20.92■□□□□ 0.94
CPSF7-223ENST00000544669 BAZ1AQ9NRL2 1556 aaPredicted RBP20.91■□□□□ 0.94
CPSF7-223ENST00000544669 CECR2Q9BXF3 1484 aa20.91■□□□□ 0.94
CPSF7-223ENST00000544669 MROH2BQ7Z745 1585 aa20.9■□□□□ 0.94
CPSF7-223ENST00000544669 TRIM26Q12899 539 aaPredicted RBP20.86■□□□□ 0.93
CPSF7-223ENST00000544669 WIZO95785 1651 aa20.73■□□□□ 0.91
CPSF7-223ENST00000544669 TOP2AP11388 1531 aaKnown RBP20.65■□□□□ 0.9
CPSF7-223ENST00000544669 ZEB1P37275 1124 aaPredicted RBP20.63■□□□□ 0.89
CPSF7-223ENST00000544669 SMARCA4P51532 1647 aa20.61■□□□□ 0.89
CPSF7-223ENST00000544669 EIF4G1Q04637 1599 aaKnown RBP20.53■□□□□ 0.88
CPSF7-223ENST00000544669 FAM9AQ8IZU1 332 aaPredicted RBP20.5■□□□□ 0.87
CPSF7-223ENST00000544669 UNC13AQ9UPW8 1703 aa20.46■□□□□ 0.87
CPSF7-223ENST00000544669 CCDC88BA6NC98 1476 aa20.45■□□□□ 0.86
CPSF7-223ENST00000544669 SMARCA2P51531 1590 aa20.42■□□□□ 0.86
CPSF7-223ENST00000544669 EEA1Q15075 1411 aa20.42■□□□□ 0.86
CPSF7-223ENST00000544669 PEG3Q9GZU2 1588 aa20.38■□□□□ 0.85
CPSF7-223ENST00000544669 BICRAQ9NZM4 1560 aa20.31■□□□□ 0.84
CPSF7-223ENST00000544669 PPARGC1BQ86YN6 1023 aaKnown RBP20.25■□□□□ 0.83
CPSF7-223ENST00000544669 WRNQ14191 1432 aaPredicted RBP eCLIP20.22■□□□□ 0.83
CPSF7-223ENST00000544669 TNIKQ9UKE5 1360 aa20.2■□□□□ 0.82
CPSF7-223ENST00000544669 ABCC8Q09428 1581 aa20.18■□□□□ 0.82
CPSF7-223ENST00000544669 CSRNP3Q8WYN3 585 aa20.16■□□□□ 0.82
CPSF7-223ENST00000544669 PABPN1Q86U42 306 aaKnown RBP eCLIP20.16■□□□□ 0.82
CPSF7-223ENST00000544669 ATAD2BQ9ULI0 1458 aa20.12■□□□□ 0.81
CPSF7-223ENST00000544669 EHMT2Q96KQ7 1210 aa20.09■□□□□ 0.81
CPSF7-223ENST00000544669 BAZ1BQ9UIG0 1483 aaKnown RBP20.08■□□□□ 0.8
CPSF7-223ENST00000544669 CEP162Q5TB80 1403 aa20.07■□□□□ 0.8
CPSF7-223ENST00000544669 GOLGA3Q08378 1498 aa20.07■□□□□ 0.8
CPSF7-223ENST00000544669 SOGA1O94964 1423 aa20.05■□□□□ 0.8
CPSF7-223ENST00000544669 CEP164Q9UPV0 1460 aa20■□□□□ 0.79
CPSF7-223ENST00000544669 UBTFP17480 764 aaKnown RBP19.97■□□□□ 0.79
CPSF7-223ENST00000544669 KIF21BO75037 1637 aa19.94■□□□□ 0.78
CPSF7-223ENST00000544669 CCER1Q8TC90 406 aaPredicted RBP19.87■□□□□ 0.77
CPSF7-223ENST00000544669 HMGXB3Q12766 1538 aa19.87■□□□□ 0.77
CPSF7-223ENST00000544669 NCAPD3P42695 1498 aa19.86■□□□□ 0.77
CPSF7-223ENST00000544669 SYNJ1O43426 1573 aa19.86■□□□□ 0.77
CPSF7-223ENST00000544669 RUSC2Q8N2Y8 1516 aa19.85■□□□□ 0.77
CPSF7-223ENST00000544669 TOP2BQ02880 1626 aa19.8■□□□□ 0.76
CPSF7-223ENST00000544669 CLIP1P30622 1438 aa19.76■□□□□ 0.75
CPSF7-223ENST00000544669 APLP2Q06481 763 aa19.74■□□□□ 0.75
CPSF7-223ENST00000544669 BIVM-ERCC5R4GMW8 1640 aa19.73■□□□□ 0.75
CPSF7-223ENST00000544669 VPS8Q8N3P4 1428 aa19.72■□□□□ 0.75
CPSF7-223ENST00000544669 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.72■□□□□ 0.75
CPSF7-223ENST00000544669 ERICH3Q5RHP9 1530 aa19.7■□□□□ 0.74
CPSF7-223ENST00000544669 CFTRP13569 1480 aa19.63■□□□□ 0.73
CPSF7-223ENST00000544669 RAPGEF2Q9Y4G8 1499 aa19.61■□□□□ 0.73
CPSF7-223ENST00000544669 KIF27Q86VH2 1401 aa19.6■□□□□ 0.73
CPSF7-223ENST00000544669 PRXQ9BXM0 1461 aa19.6■□□□□ 0.73
CPSF7-223ENST00000544669 CUX1P39880 1505 aa19.49■□□□□ 0.71
CPSF7-223ENST00000544669 TTBK1Q5TCY1 1321 aaPredicted RBP19.49■□□□□ 0.71
CPSF7-223ENST00000544669 CLSPNQ9HAW4 1339 aa19.46■□□□□ 0.71
CPSF7-223ENST00000544669 DIEXFQ68CQ4 756 aaKnown RBP19.45■□□□□ 0.7
CPSF7-223ENST00000544669 PRDM2Q13029 1718 aa19.44■□□□□ 0.7
CPSF7-223ENST00000544669 CADPSQ9ULU8 1353 aa19.42■□□□□ 0.7
CPSF7-223ENST00000544669 ZNF316A6NFI3 1004 aaPredicted RBP19.41■□□□□ 0.7
CPSF7-223ENST00000544669 CENPBP07199 599 aaPredicted RBP19.38■□□□□ 0.69
CPSF7-223ENST00000544669 ARAP1Q96P48 1450 aa19.36■□□□□ 0.69
CPSF7-223ENST00000544669 HNRNPUL2Q1KMD3 747 aaKnown RBP19.35■□□□□ 0.69
CPSF7-223ENST00000544669 PELP1Q8IZL8 1130 aaKnown RBP19.32■□□□□ 0.68
CPSF7-223ENST00000544669 MAP3K1Q13233 1512 aa19.29■□□□□ 0.68
CPSF7-223ENST00000544669 IGF1RP08069 1367 aa19.28■□□□□ 0.68
CPSF7-223ENST00000544669 RRBP1Q9P2E9 1410 aaKnown RBP19.27■□□□□ 0.68
CPSF7-223ENST00000544669 CUX2O14529 1486 aa19.26■□□□□ 0.67
CPSF7-223ENST00000544669 ACIN1Q9UKV3 1341 aaKnown RBP19.26■□□□□ 0.67
CPSF7-223ENST00000544669 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
CPSF7-223ENST00000544669 ARHGAP35Q9NRY4 1499 aa19.23■□□□□ 0.67
CPSF7-223ENST00000544669 CARMIL1Q5VZK9 1371 aa19.23■□□□□ 0.67
CPSF7-223ENST00000544669 FGD5Q6ZNL6 1462 aa19.19■□□□□ 0.66
CPSF7-223ENST00000544669 FHAD1B1AJZ9 1412 aa19.19■□□□□ 0.66
CPSF7-223ENST00000544669 SCAF1Q9H7N4 1312 aaKnown RBP19.19■□□□□ 0.66
CPSF7-223ENST00000544669 CC2D2AQ9P2K1 1620 aa19.16■□□□□ 0.66
CPSF7-223ENST00000544669 CCNB3Q8WWL7 1395 aa19.16■□□□□ 0.66
CPSF7-223ENST00000544669 FANCD2Q9BXW9 1451 aa19.16■□□□□ 0.66
CPSF7-223ENST00000544669 KANK4Q5T7N3 995 aaPredicted RBP19.14■□□□□ 0.65
CPSF7-223ENST00000544669 DNMBPQ6XZF7 1577 aa19.13■□□□□ 0.65
CPSF7-223ENST00000544669 DHX57Q6P158 1386 aaKnown RBP19.12■□□□□ 0.65
CPSF7-223ENST00000544669 ABCA10Q8WWZ4 1543 aa19.1■□□□□ 0.65
CPSF7-223ENST00000544669 TIAM1Q13009 1591 aa19.07■□□□□ 0.64
CPSF7-223ENST00000544669 EFCAB5A4FU69 1503 aa19.07■□□□□ 0.64
CPSF7-223ENST00000544669 NEUROD1Q13562 356 aa19.05■□□□□ 0.64
CPSF7-223ENST00000544669 CUL7Q14999 1698 aa19.04■□□□□ 0.64
CPSF7-223ENST00000544669 AQRO60306 1485 aaKnown RBP eCLIP19.02■□□□□ 0.643e-7■■■■■ 40.5
CPSF7-223ENST00000544669 LAMC3Q9Y6N6 1575 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms