RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 KMT2DO14686 5537 aa4.33□□□□□ -1.72
CPSF7-223ENST00000544669 SSPOA2VEC9 5147 aa4.32□□□□□ -1.72
CPSF7-223ENST00000544669 KRTAP19-3Q7Z4W3 81 aa4.28□□□□□ -1.72
CPSF7-223ENST00000544669 MT1MQ8N339 61 aa4.23□□□□□ -1.73
CPSF7-223ENST00000544669 KRTAP9-2Q9BYQ4 174 aa4.18□□□□□ -1.74
CPSF7-223ENST00000544669 KRTAP9-6A0A140TA67 174 aa4.16□□□□□ -1.74
CPSF7-223ENST00000544669 LCE5AQ5TCM9 118 aa4.12□□□□□ -1.75
CPSF7-223ENST00000544669 KRTAP4-3Q9BYR4 195 aa4.08□□□□□ -1.76
CPSF7-223ENST00000544669 SPRR2FQ96RM1 72 aa4.07□□□□□ -1.76
CPSF7-223ENST00000544669 LOC100996750A0A140TA64 210 aa4.07□□□□□ -1.76
CPSF7-223ENST00000544669 FSIP2Q5CZC0 6907 aa4.01□□□□□ -1.77
CPSF7-223ENST00000544669 FCGBPQ9Y6R7 5405 aaPredicted RBP3.99□□□□□ -1.77
CPSF7-223ENST00000544669 CRCT1Q9UGL9 99 aa3.97□□□□□ -1.77
CPSF7-223ENST00000544669 MT1AP04731 61 aa3.93□□□□□ -1.78
CPSF7-223ENST00000544669 KRTAP12-4P60329 112 aa3.92□□□□□ -1.78
CPSF7-223ENST00000544669 KRTAP5-9P26371 169 aa3.87□□□□□ -1.79
CPSF7-223ENST00000544669 MUC12Q9UKN1 5478 aa3.85□□□□□ -1.79
CPSF7-223ENST00000544669 LCE1AQ5T7P2 110 aa3.81□□□□□ -1.8
CPSF7-223ENST00000544669 LCE3BQ5TA77 95 aa3.81□□□□□ -1.8
CPSF7-223ENST00000544669 KRTAP9-4Q9BYQ2 154 aa3.77□□□□□ -1.81
CPSF7-223ENST00000544669 KRTAP6-1Q3LI64 71 aa3.77□□□□□ -1.81
CPSF7-223ENST00000544669 MACF1Q9UPN3 7388 aaKnown RBP3.75□□□□□ -1.81
CPSF7-223ENST00000544669 KRTAP5-5Q701N2 237 aaPredicted RBP3.74□□□□□ -1.81
CPSF7-223ENST00000544669 LCE3DQ9BYE3 92 aa3.74□□□□□ -1.81
CPSF7-223ENST00000544669 SPRR2EP22531 72 aa3.73□□□□□ -1.81
CPSF7-223ENST00000544669 SPRR2BP35325 72 aa3.73□□□□□ -1.81
CPSF7-223ENST00000544669 SPRR2AP35326 72 aa3.73□□□□□ -1.81
CPSF7-223ENST00000544669 LCE3EQ5T5B0 92 aa3.71□□□□□ -1.82
CPSF7-223ENST00000544669 KRTAP9-7A8MTY7 169 aa3.7□□□□□ -1.82
CPSF7-223ENST00000544669 LCE4AQ5TA78 99 aa3.67□□□□□ -1.82
CPSF7-223ENST00000544669 KRTAP9-9Q9BYP9 154 aa3.67□□□□□ -1.82
CPSF7-223ENST00000544669 DSTQ03001 7570 aaKnown RBP3.64□□□□□ -1.83
CPSF7-223ENST00000544669 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.63□□□□□ -1.83
CPSF7-223ENST00000544669 KRTAP4-9Q9BYQ8 210 aa3.6□□□□□ -1.83
CPSF7-223ENST00000544669 SPRR2DP22532 72 aa3.59□□□□□ -1.83
CPSF7-223ENST00000544669 KRTAP6-3Q3LI67 103 aa3.58□□□□□ -1.84
CPSF7-223ENST00000544669 SYNE2Q8WXH0 6885 aaKnown RBP3.55□□□□□ -1.84
CPSF7-223ENST00000544669 MT3P25713 68 aa3.54□□□□□ -1.84
CPSF7-223ENST00000544669 SYNE1Q8NF91 8797 aaKnown RBP3.51□□□□□ -1.85
CPSF7-223ENST00000544669 MDN1Q9NU22 5596 aa3.5□□□□□ -1.85
CPSF7-223ENST00000544669 KRTAP4-12Q9BQ66 201 aa3.49□□□□□ -1.85
CPSF7-223ENST00000544669 KRTAP4-6Q9BYQ5 205 aa3.46□□□□□ -1.86
CPSF7-223ENST00000544669 PRM1P04553 51 aa3.42□□□□□ -1.86
CPSF7-223ENST00000544669 KRTAP6-2Q3LI66 62 aa3.4□□□□□ -1.87
CPSF7-223ENST00000544669 KRTAP5-4Q6L8H1 288 aa3.35□□□□□ -1.87
CPSF7-223ENST00000544669 NEBP20929 6669 aa3.33□□□□□ -1.88
CPSF7-223ENST00000544669 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
CPSF7-223ENST00000544669 KRTAP20-1Q3LI63 56 aa3.18□□□□□ -1.9
CPSF7-223ENST00000544669 KRTAP2-2Q9BYT5 123 aa3.14□□□□□ -1.91
CPSF7-223ENST00000544669 KRTAP5-2Q701N4 177 aa3.13□□□□□ -1.91
CPSF7-223ENST00000544669 KRTAP20-2Q3LI61 65 aa3.1□□□□□ -1.91
CPSF7-223ENST00000544669 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
CPSF7-223ENST00000544669 MT4P47944 62 aa3.05□□□□□ -1.92
CPSF7-223ENST00000544669 GPR98Q8WXG9 6306 aa3.03□□□□□ -1.92
CPSF7-223ENST00000544669 LCE1DQ5T752 114 aa3.01□□□□□ -1.93
CPSF7-223ENST00000544669 LCE1EQ5T753 118 aa2.96□□□□□ -1.94
CPSF7-223ENST00000544669 KRTAP5-3Q6L8H2 238 aa2.96□□□□□ -1.94
CPSF7-223ENST00000544669 KRTAP4-11Q9BYQ6 195 aa2.88□□□□□ -1.95
CPSF7-223ENST00000544669 HMCN1Q96RW7 5635 aa2.79□□□□□ -1.96
CPSF7-223ENST00000544669 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
CPSF7-223ENST00000544669 LCE1BQ5T7P3 118 aa2.73□□□□□ -1.97
CPSF7-223ENST00000544669 MUC5ACP98088 5654 aa2.72□□□□□ -1.97
CPSF7-223ENST00000544669 KRTAP4-2Q9BYR5 136 aa2.71□□□□□ -1.98
CPSF7-223ENST00000544669 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
CPSF7-223ENST00000544669 KRTAP5-1Q6L8H4 278 aa2.7□□□□□ -1.98
CPSF7-223ENST00000544669 AHNAK2Q8IVF2 5795 aa2.62□□□□□ -1.99
CPSF7-223ENST00000544669 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
CPSF7-223ENST00000544669 KRTAP5-8O75690 187 aa2.54□□□□□ -2
CPSF7-223ENST00000544669 KRTAP5-7Q6L8G8 165 aa2.52□□□□□ -2.01
CPSF7-223ENST00000544669 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.02
CPSF7-223ENST00000544669 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
CPSF7-223ENST00000544669 AHNAKQ09666 5890 aaKnown RBP2.29□□□□□ -2.04
CPSF7-223ENST00000544669 MUC5BQ9HC84 5762 aaPredicted RBP2.21□□□□□ -2.06
CPSF7-223ENST00000544669 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.06
CPSF7-223ENST00000544669 KRTAP4-4Q9BYR3 166 aa2.09□□□□□ -2.08
CPSF7-223ENST00000544669 PHGR1C9JFL3 82 aa2□□□□□ -2.09
CPSF7-223ENST00000544669 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
CPSF7-223ENST00000544669 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 13.6 ms