RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 LRRC9Q6ZRR7 1453 aa19.02■□□□□ 0.63
CPSF7-223ENST00000544669 TOPBP1Q92547 1522 aa19.01■□□□□ 0.63
CPSF7-223ENST00000544669 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.99■□□□□ 0.631e-11■■□□□ 12.1
CPSF7-223ENST00000544669 POLA1P09884 1462 aaPredicted RBP18.97■□□□□ 0.63
CPSF7-223ENST00000544669 FYCO1Q9BQS8 1478 aa18.97■□□□□ 0.63
CPSF7-223ENST00000544669 TIMELESSQ9UNS1 1208 aa18.96■□□□□ 0.63
CPSF7-223ENST00000544669 FMN1Q68DA7 1419 aa18.95■□□□□ 0.62
CPSF7-223ENST00000544669 CASKIN1Q8WXD9 1431 aa18.94■□□□□ 0.62
CPSF7-223ENST00000544669 PDS5BQ9NTI5 1447 aa18.93■□□□□ 0.62
CPSF7-223ENST00000544669 SETD5Q9C0A6 1442 aa18.93■□□□□ 0.62
CPSF7-223ENST00000544669 CFAP43Q8NDM7 1665 aa18.93■□□□□ 0.62
CPSF7-223ENST00000544669 GTF3C3Q9Y5Q9 886 aa18.91■□□□□ 0.62
CPSF7-223ENST00000544669 MIER1Q8N108 512 aa18.9■□□□□ 0.62
CPSF7-223ENST00000544669 RAB3GAP2Q9H2M9 1393 aa18.88■□□□□ 0.61
CPSF7-223ENST00000544669 RAD54L2Q9Y4B4 1467 aa18.88■□□□□ 0.61
CPSF7-223ENST00000544669 CTTNBP2Q8WZ74 1663 aa18.85■□□□□ 0.61
CPSF7-223ENST00000544669 PCF11O94913 1555 aaKnown RBP18.84■□□□□ 0.61
CPSF7-223ENST00000544669 PHLDB1Q86UU1 1377 aa18.83■□□□□ 0.61
CPSF7-223ENST00000544669 WDR97A6NE52 1622 aa18.81■□□□□ 0.6
CPSF7-223ENST00000544669 ITGAEP38570 1179 aa18.8■□□□□ 0.6
CPSF7-223ENST00000544669 THOC2Q8NI27 1593 aaKnown RBP18.8■□□□□ 0.6
CPSF7-223ENST00000544669 GAPVD1Q14C86 1478 aa18.79■□□□□ 0.6
CPSF7-223ENST00000544669 NESP48681 1621 aa18.79■□□□□ 0.6
CPSF7-223ENST00000544669 URB2Q14146 1524 aaKnown RBP18.79■□□□□ 0.6
CPSF7-223ENST00000544669 FHOD3Q2V2M9 1422 aa18.79■□□□□ 0.6
CPSF7-223ENST00000544669 FAM50AQ14320 339 aaKnown RBP18.79■□□□□ 0.6
CPSF7-223ENST00000544669 ABCA5Q8WWZ7 1642 aa18.78■□□□□ 0.6
CPSF7-223ENST00000544669 ATP1B4Q9UN42 357 aaPredicted RBP18.77■□□□□ 0.59
CPSF7-223ENST00000544669 P3H3Q8IVL6 736 aa18.74■□□□□ 0.59
CPSF7-223ENST00000544669 SAMD9Q5K651 1589 aa18.74■□□□□ 0.59
CPSF7-223ENST00000544669 MAPKBP1O60336 1514 aa18.73■□□□□ 0.59
CPSF7-223ENST00000544669 YTHDC1Q96MU7 727 aaKnown RBP18.73■□□□□ 0.59
CPSF7-223ENST00000544669 MTUS2Q5JR59 1369 aa18.73■□□□□ 0.59
CPSF7-223ENST00000544669 SNAPC4Q5SXM2 1469 aa18.71■□□□□ 0.59
CPSF7-223ENST00000544669 FGD6Q6ZV73 1430 aa18.71■□□□□ 0.59
CPSF7-223ENST00000544669 KIF21AQ7Z4S6 1674 aa18.7■□□□□ 0.58
CPSF7-223ENST00000544669 CCDC18Q5T9S5 1454 aa18.68■□□□□ 0.58
CPSF7-223ENST00000544669 TDRD9Q8NDG6 1382 aaKnown RBP18.68■□□□□ 0.58
CPSF7-223ENST00000544669 EHBP1L1Q8N3D4 1523 aa18.66■□□□□ 0.58
CPSF7-223ENST00000544669 GRIN2BQ13224 1484 aa18.65■□□□□ 0.58
CPSF7-223ENST00000544669 HFM1A2PYH4 1435 aa18.64■□□□□ 0.57
CPSF7-223ENST00000544669 MYOM3Q5VTT5 1437 aa18.63■□□□□ 0.57
CPSF7-223ENST00000544669 SUPT6HQ7KZ85 1726 aaKnown RBP18.61■□□□□ 0.57
CPSF7-223ENST00000544669 TARBP1Q13395 1621 aaKnown RBP18.6■□□□□ 0.57
CPSF7-223ENST00000544669 UACAQ9BZF9 1416 aa18.6■□□□□ 0.57
CPSF7-223ENST00000544669 NCOA2Q15596 1464 aa18.59■□□□□ 0.57
CPSF7-223ENST00000544669 PPP1R15AO75807 674 aaPredicted RBP18.58■□□□□ 0.56
CPSF7-223ENST00000544669 MRC2Q9UBG0 1479 aa18.56■□□□□ 0.56
CPSF7-223ENST00000544669 HECW1Q76N89 1606 aa18.56■□□□□ 0.56
CPSF7-223ENST00000544669 AKNAQ7Z591 1439 aa18.54■□□□□ 0.56
CPSF7-223ENST00000544669 TONSLQ96HA7 1378 aa18.53■□□□□ 0.56
CPSF7-223ENST00000544669 MIA2Q96PC5 1412 aa18.53■□□□□ 0.56
CPSF7-223ENST00000544669 ARHGEF11O15085 1522 aa18.53■□□□□ 0.56
CPSF7-223ENST00000544669 IQGAP2Q13576 1575 aa18.53■□□□□ 0.56
CPSF7-223ENST00000544669 UGGT2Q9NYU1 1516 aa18.53■□□□□ 0.56
CPSF7-223ENST00000544669 TCOF1Q13428 1488 aaKnown RBP18.52■□□□□ 0.56
CPSF7-223ENST00000544669 SIN3AQ96ST3 1273 aa18.51■□□□□ 0.55
CPSF7-223ENST00000544669 PTPN23Q9H3S7 1636 aa18.51■□□□□ 0.55
CPSF7-223ENST00000544669 IFT140Q96RY7 1462 aa18.5■□□□□ 0.55
CPSF7-223ENST00000544669 NAIPQ13075 1403 aa18.49■□□□□ 0.55
CPSF7-223ENST00000544669 ADAMTS12P58397 1594 aa18.49■□□□□ 0.55
CPSF7-223ENST00000544669 PBRM1Q86U86 1689 aa18.49■□□□□ 0.55
CPSF7-223ENST00000544669 CCER2I3L3R5 266 aa18.47■□□□□ 0.55
CPSF7-223ENST00000544669 MYT1Q01538 1121 aa18.46■□□□□ 0.55
CPSF7-223ENST00000544669 EPRSP07814 1512 aaKnown RBP18.45■□□□□ 0.54
CPSF7-223ENST00000544669 CDK11AQ9UQ88 783 aaPredicted RBP18.44■□□□□ 0.54
CPSF7-223ENST00000544669 KIAA0586Q9BVV6 1533 aa18.42■□□□□ 0.54
CPSF7-223ENST00000544669 PTPRKQ15262 1439 aa18.42■□□□□ 0.54
CPSF7-223ENST00000544669 ANP32CO43423 234 aa18.41■□□□□ 0.54
CPSF7-223ENST00000544669 LRRIQ1Q96JM4 1722 aa18.4■□□□□ 0.54
CPSF7-223ENST00000544669 DDX10Q13206 875 aaKnown RBP18.39■□□□□ 0.53
CPSF7-223ENST00000544669 WDR62O43379 1518 aa18.38■□□□□ 0.53
CPSF7-223ENST00000544669 ROCK1Q13464 1354 aa18.38■□□□□ 0.53
CPSF7-223ENST00000544669 GCC2Q8IWJ2 1684 aa18.37■□□□□ 0.53
CPSF7-223ENST00000544669 MAGI3Q5TCQ9 1506 aa18.34■□□□□ 0.53
CPSF7-223ENST00000544669 SUPT16HQ9Y5B9 1047 aaKnown RBP18.3■□□□□ 0.52
CPSF7-223ENST00000544669 MAGI1Q96QZ7 1491 aaPredicted RBP18.29■□□□□ 0.52
CPSF7-223ENST00000544669 KIAA0556O60303 1618 aa18.29■□□□□ 0.52
CPSF7-223ENST00000544669 TRIM52Q96A61 297 aa18.28■□□□□ 0.52
CPSF7-223ENST00000544669 DNAJC5BQ9UF47 199 aa18.28■□□□□ 0.52
CPSF7-223ENST00000544669 GRIN2AQ12879 1464 aa18.28■□□□□ 0.52
CPSF7-223ENST00000544669 MPHOSPH9Q99550 1183 aa18.26■□□□□ 0.51
CPSF7-223ENST00000544669 RRP7BPQ9NSQ0 103 aa18.26■□□□□ 0.51
CPSF7-223ENST00000544669 DISP1Q96F81 1524 aa18.26■□□□□ 0.51
CPSF7-223ENST00000544669 CDK13Q14004 1512 aaKnown RBP18.24■□□□□ 0.51
CPSF7-223ENST00000544669 DAPK1P53355 1430 aa18.24■□□□□ 0.51
CPSF7-223ENST00000544669 CARMIL2Q6F5E8 1435 aa18.24■□□□□ 0.51
CPSF7-223ENST00000544669 RAPGEF6Q8TEU7 1601 aa18.24■□□□□ 0.51
CPSF7-223ENST00000544669 EIF4G2P78344 907 aaKnown RBP eCLIP18.23■□□□□ 0.51
CPSF7-223ENST00000544669 CHIC2Q9UKJ5 165 aa18.22■□□□□ 0.51
CPSF7-223ENST00000544669 DNMT1P26358 1616 aaKnown RBP18.22■□□□□ 0.51
CPSF7-223ENST00000544669 ZNF608Q9ULD9 1512 aaPredicted RBP18.21■□□□□ 0.51
CPSF7-223ENST00000544669 TROQ12816 1431 aaPredicted RBP18.21■□□□□ 0.51
CPSF7-223ENST00000544669 NUP153P49790 1475 aaKnown RBP18.21■□□□□ 0.51
CPSF7-223ENST00000544669 NEFLP07196 543 aa18.21■□□□□ 0.51
CPSF7-223ENST00000544669 SYNJ2O15056 1496 aa18.2■□□□□ 0.5
CPSF7-223ENST00000544669 CHMP7Q8WUX9 453 aaPredicted RBP18.19■□□□□ 0.5
CPSF7-223ENST00000544669 KDM5BQ9UGL1 1544 aa18.18■□□□□ 0.5
CPSF7-223ENST00000544669 ABCC5O15440 1437 aa18.18■□□□□ 0.5
CPSF7-223ENST00000544669 EIF4G3O43432 1585 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms