RNA–Protein interactions for RNA: ENST00000514006.1

CALCOCO2-222, Transcript of calcium binding and coiled-coil domain 2, human

TSL 2

Gene CALCOCO2, Length 500 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALCOCO2-222	ENST00000514006	CHIC1	Q5VXU3	224 aa		18.82	■□□□□ 0.6
CALCOCO2-222	ENST00000514006	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.58	■□□□□ 0.56
CALCOCO2-222	ENST00000514006	PHF23	Q9BUL5	403 aa	Predicted RBP	16.61	■□□□□ 0.25
CALCOCO2-222	ENST00000514006	SENP3	Q9H4L4	574 aa	Predicted RBP	15.69	■□□□□ 0.1
CALCOCO2-222	ENST00000514006	PLPPR3	Q6T4P5	718 aa		15.61	■□□□□ 0.09
CALCOCO2-222	ENST00000514006	ADRA2B	P18089	450 aa		14.57	□□□□□ -0.08
CALCOCO2-222	ENST00000514006	FOXD1	Q16676	465 aa		14.46	□□□□□ -0.09
CALCOCO2-222	ENST00000514006	PPP6R1	Q9UPN7	881 aa		14.44	□□□□□ -0.1
CALCOCO2-222	ENST00000514006	POTED	Q86YR6	584 aa		14.37	□□□□□ -0.11
CALCOCO2-222	ENST00000514006	KCNA4	P22459	653 aa		14.27	□□□□□ -0.13
CALCOCO2-222	ENST00000514006	EHMT2	Q96KQ7	1210 aa		14.14	□□□□□ -0.15
CALCOCO2-222	ENST00000514006	PPP4R3CP	Q6ZMV5	832 aa		13.83	□□□□□ -0.2
CALCOCO2-222	ENST00000514006	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.83	□□□□□ -0.2
CALCOCO2-222	ENST00000514006	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.74	□□□□□ -0.21
CALCOCO2-222	ENST00000514006	MSH5	O43196	834 aa		13.69	□□□□□ -0.22
CALCOCO2-222	ENST00000514006	NCBP3	Q53F19	620 aa	Known RBP	13.69	□□□□□ -0.22
CALCOCO2-222	ENST00000514006	CSRNP3	Q8WYN3	585 aa		13.62	□□□□□ -0.23
CALCOCO2-222	ENST00000514006	NPM3	O75607	178 aa	Known RBP	13.46	□□□□□ -0.25
CALCOCO2-222	ENST00000514006	CNKSR2	Q8WXI2	1034 aa		13.3	□□□□□ -0.28
CALCOCO2-222	ENST00000514006	SCAF1	Q9H7N4	1312 aa	Known RBP	13.28	□□□□□ -0.28
CALCOCO2-222	ENST00000514006	ZBTB22	O15209	634 aa		13.13	□□□□□ -0.31
CALCOCO2-222	ENST00000514006	FOXD4L1	Q9NU39	408 aa		12.95	□□□□□ -0.34
CALCOCO2-222	ENST00000514006	DNAJC5B	Q9UF47	199 aa		12.94	□□□□□ -0.34
CALCOCO2-222	ENST00000514006	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.93	□□□□□ -0.34
CALCOCO2-222	ENST00000514006	RNF216	Q9NWF9	866 aa	Predicted RBP	12.87	□□□□□ -0.35
CALCOCO2-222	ENST00000514006	HOXD11	P31277	338 aa	Predicted RBP	12.62	□□□□□ -0.39
CALCOCO2-222	ENST00000514006	DMRT2	Q9Y5R5	561 aa		12.62	□□□□□ -0.39
CALCOCO2-222	ENST00000514006	SLC4A2	P04920	1241 aa		12.53	□□□□□ -0.4
CALCOCO2-222	ENST00000514006	MYCN	P04198	464 aa	Predicted RBP	12.44	□□□□□ -0.42
CALCOCO2-222	ENST00000514006	ATXN8OS	P0DMR3	200 aa		12.44	□□□□□ -0.42
CALCOCO2-222	ENST00000514006	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.41	□□□□□ -0.42
CALCOCO2-222	ENST00000514006	RTN4	Q9NQC3	1192 aa	Known RBP	12.38	□□□□□ -0.43
CALCOCO2-222	ENST00000514006	SLC24A1	O60721	1099 aa		12.32	□□□□□ -0.44
CALCOCO2-222	ENST00000514006	FKBP8	Q14318	412 aa		12.3	□□□□□ -0.44
CALCOCO2-222	ENST00000514006	DCAF8L1	A6NGE4	600 aa		12.08	□□□□□ -0.48
CALCOCO2-222	ENST00000514006	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.06	□□□□□ -0.48	2e-10	■■□□□ 14.5
CALCOCO2-222	ENST00000514006	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.03	□□□□□ -0.48
CALCOCO2-222	ENST00000514006	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.03	□□□□□ -0.48
CALCOCO2-222	ENST00000514006	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.03	□□□□□ -0.48
CALCOCO2-222	ENST00000514006	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.01	□□□□□ -0.49
CALCOCO2-222	ENST00000514006	CACNB1	Q02641	598 aa	Predicted RBP	11.97	□□□□□ -0.49
CALCOCO2-222	ENST00000514006		U3KPZ7	1027 aa	Predicted RBP	11.92	□□□□□ -0.5
CALCOCO2-222	ENST00000514006	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.78	□□□□□ -0.52
CALCOCO2-222	ENST00000514006	APLP2	Q06481	763 aa		11.76	□□□□□ -0.53
CALCOCO2-222	ENST00000514006	FBXO3	Q9UK99	471 aa		11.69	□□□□□ -0.54
CALCOCO2-222	ENST00000514006	SPDYE4	A6NLX3	237 aa		11.64	□□□□□ -0.55
CALCOCO2-222	ENST00000514006	MKRN4P	Q13434	485 aa	Predicted RBP	11.54	□□□□□ -0.56
CALCOCO2-222	ENST00000514006	FBLN2	P98095	1184 aa		11.53	□□□□□ -0.56
CALCOCO2-222	ENST00000514006	PROM2	Q8N271	834 aa		11.51	□□□□□ -0.57
CALCOCO2-222	ENST00000514006	RNF39	Q9H2S5	420 aa		11.51	□□□□□ -0.57
CALCOCO2-222	ENST00000514006	VASP	P50552	380 aa	Predicted RBP	11.49	□□□□□ -0.57
CALCOCO2-222	ENST00000514006	TRH	P20396	242 aa	Predicted RBP	11.45	□□□□□ -0.58
CALCOCO2-222	ENST00000514006	PLCB2	Q00722	1185 aa		11.42	□□□□□ -0.58
CALCOCO2-222	ENST00000514006	C1QBP	Q07021	282 aa	Known RBP	11.42	□□□□□ -0.58
CALCOCO2-222	ENST00000514006	POLA2	Q14181	598 aa		11.4	□□□□□ -0.58
CALCOCO2-222	ENST00000514006	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.39	□□□□□ -0.59
CALCOCO2-222	ENST00000514006	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.38	□□□□□ -0.59
CALCOCO2-222	ENST00000514006	DCAF8L2	P0C7V8	631 aa		11.36	□□□□□ -0.59
CALCOCO2-222	ENST00000514006	CAPN15	O75808	1086 aa		11.34	□□□□□ -0.59
CALCOCO2-222	ENST00000514006	HAP1	P54257	671 aa	Predicted RBP	11.29	□□□□□ -0.6
CALCOCO2-222	ENST00000514006	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.28	□□□□□ -0.6
CALCOCO2-222	ENST00000514006	PKD2	Q13563	968 aa		11.25	□□□□□ -0.61
CALCOCO2-222	ENST00000514006	ABCB7	O75027	752 aa		11.17	□□□□□ -0.62
CALCOCO2-222	ENST00000514006	KLHL34	Q8N239	644 aa		11.16	□□□□□ -0.62
CALCOCO2-222	ENST00000514006	SPOCK2	Q92563	424 aa		11.15	□□□□□ -0.62
CALCOCO2-222	ENST00000514006	VSIG10	Q8N0Z9	540 aa		11.11	□□□□□ -0.63
CALCOCO2-222	ENST00000514006	BCAN	Q96GW7	911 aa		11.11	□□□□□ -0.63
CALCOCO2-222	ENST00000514006	ECM2	O94769	699 aa	Predicted RBP	11.1	□□□□□ -0.63
CALCOCO2-222	ENST00000514006	STAG3	Q9UJ98	1225 aa		11.1	□□□□□ -0.63
CALCOCO2-222	ENST00000514006	ZNF692	Q9BU19	519 aa	Predicted RBP	11.09	□□□□□ -0.63
CALCOCO2-222	ENST00000514006	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.09	□□□□□ -0.63
CALCOCO2-222	ENST00000514006	POTEH	Q6S545	545 aa		11.08	□□□□□ -0.64
CALCOCO2-222	ENST00000514006	BBX	Q8WY36	941 aa	Predicted RBP	11.06	□□□□□ -0.64
CALCOCO2-222	ENST00000514006	PLCD3	Q8N3E9	789 aa		11.04	□□□□□ -0.64
CALCOCO2-222	ENST00000514006	SPDYE2B	A6NHP3	402 aa		11.01	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	SPDYE6	P0CI01	402 aa		11.01	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	SPDYE2	Q495Y8	402 aa		11.01	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.99	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	OSCAR	Q8IYS5	282 aa		10.99	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	SSUH2	Q9Y2M2	353 aa		10.99	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	NPM1	P06748	294 aa	Known RBP eCLIP	10.97	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	MIER1	Q8N108	512 aa		10.97	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	CFAP44	Q96MT7	982 aa		10.97	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	DSG3	P32926	999 aa		10.96	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.96	□□□□□ -0.65
CALCOCO2-222	ENST00000514006	RGL2	O15211	777 aa		10.94	□□□□□ -0.66
CALCOCO2-222	ENST00000514006	TAOK2	Q9UL54	1235 aa		10.93	□□□□□ -0.66
CALCOCO2-222	ENST00000514006	PRKCSH	P14314	528 aa	Predicted RBP	10.91	□□□□□ -0.66
CALCOCO2-222	ENST00000514006	KDM2A	Q9Y2K7	1162 aa		10.91	□□□□□ -0.66
CALCOCO2-222	ENST00000514006	PLEKHG5	O94827	1062 aa		10.9	□□□□□ -0.66
CALCOCO2-222	ENST00000514006	SPRYD3	Q8NCJ5	442 aa		10.88	□□□□□ -0.67
CALCOCO2-222	ENST00000514006	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.88	□□□□□ -0.67
CALCOCO2-222	ENST00000514006	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.87	□□□□□ -0.67
CALCOCO2-222	ENST00000514006	CHGA	P10645	457 aa	Known RBP	10.82	□□□□□ -0.68
CALCOCO2-222	ENST00000514006	TRIM41	Q8WV44	630 aa		10.79	□□□□□ -0.68
CALCOCO2-222	ENST00000514006	TSHZ2	Q9NRE2	1034 aa		10.79	□□□□□ -0.68
CALCOCO2-222	ENST00000514006	TPRN	Q4KMQ1	711 aa		10.78	□□□□□ -0.68
CALCOCO2-222	ENST00000514006	HS6ST3	Q8IZP7	471 aa		10.71	□□□□□ -0.69
CALCOCO2-222	ENST00000514006	GSE1	Q14687	1217 aa		10.69	□□□□□ -0.7
CALCOCO2-222	ENST00000514006	DNAJC5	Q9H3Z4	198 aa		10.64	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms