RNA–Protein interactions for RNA: ENST00000509018.5

RAPGEF6-208, Transcript of Rap guanine nucleotide exchange factor 6, human

APPRIS P3 TSL 1 (best) BASIC

Gene RAPGEF6, Length 8,357 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAPGEF6-208	ENST00000509018	DCAF8L2	P0C7V8	631 aa		13.93	□□□□□ -0.18
RAPGEF6-208	ENST00000509018	EHMT2	Q96KQ7	1210 aa		13.25	□□□□□ -0.29
RAPGEF6-208	ENST00000509018	SUPT5H	O00267	1087 aa	Known RBP	12.79	□□□□□ -0.36
RAPGEF6-208	ENST00000509018	SHROOM4	Q9ULL8	1493 aa		12.71	□□□□□ -0.37
RAPGEF6-208	ENST00000509018	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.62	□□□□□ -0.39
RAPGEF6-208	ENST00000509018	RANGAP1	P46060	587 aa	Predicted RBP	12.48	□□□□□ -0.41
RAPGEF6-208	ENST00000509018	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.34	□□□□□ -0.43
RAPGEF6-208	ENST00000509018	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.08	□□□□□ -0.48
RAPGEF6-208	ENST00000509018	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.96	□□□□□ -0.5
RAPGEF6-208	ENST00000509018	CHIC1	Q5VXU3	224 aa		11.9	□□□□□ -0.5
RAPGEF6-208	ENST00000509018	CNGB1	Q14028	1251 aa	Predicted RBP	11.8	□□□□□ -0.52
RAPGEF6-208	ENST00000509018	PCGF6	Q9BYE7	350 aa		11.74	□□□□□ -0.53
RAPGEF6-208	ENST00000509018	APLP2	Q06481	763 aa		11.71	□□□□□ -0.54
RAPGEF6-208	ENST00000509018	MYT1L	Q9UL68	1186 aa		11.67	□□□□□ -0.54
RAPGEF6-208	ENST00000509018	YTHDC1	Q96MU7	727 aa	Known RBP	11.58	□□□□□ -0.56
RAPGEF6-208	ENST00000509018	ITGAE	P38570	1179 aa		11.58	□□□□□ -0.56
RAPGEF6-208	ENST00000509018	POLR3GL	Q9BT43	218 aa		11.58	□□□□□ -0.56
RAPGEF6-208	ENST00000509018	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.54	□□□□□ -0.56
RAPGEF6-208	ENST00000509018	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.54	□□□□□ -0.56
RAPGEF6-208	ENST00000509018	NISCH	Q9Y2I1	1504 aa		11.5	□□□□□ -0.57
RAPGEF6-208	ENST00000509018	UBTF	P17480	764 aa	Known RBP	11.48	□□□□□ -0.57
RAPGEF6-208	ENST00000509018	PLPPR3	Q6T4P5	718 aa		11.45	□□□□□ -0.58
RAPGEF6-208	ENST00000509018	TRIM41	Q8WV44	630 aa		11.42	□□□□□ -0.58
RAPGEF6-208	ENST00000509018	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
RAPGEF6-208	ENST00000509018	ARID3C	A6NKF2	412 aa		11.36	□□□□□ -0.59
RAPGEF6-208	ENST00000509018	CCER1	Q8TC90	406 aa	Predicted RBP	11.33	□□□□□ -0.6
RAPGEF6-208	ENST00000509018	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.33	□□□□□ -0.6
RAPGEF6-208	ENST00000509018	SENP3	Q9H4L4	574 aa	Predicted RBP	11.26	□□□□□ -0.61
RAPGEF6-208	ENST00000509018	BCL11A	Q9H165	835 aa		11.25	□□□□□ -0.61
RAPGEF6-208	ENST00000509018	LOC105371045	A0A1W2PR82	267 aa		11.22	□□□□□ -0.61
RAPGEF6-208	ENST00000509018	FBLN2	P98095	1184 aa		11.21	□□□□□ -0.62
RAPGEF6-208	ENST00000509018	MYT1	Q01538	1121 aa		11.16	□□□□□ -0.62
RAPGEF6-208	ENST00000509018	ERICH6	Q7L0X2	663 aa		11.15	□□□□□ -0.62
RAPGEF6-208	ENST00000509018	PLEKHG5	O94827	1062 aa		11.11	□□□□□ -0.63
RAPGEF6-208	ENST00000509018	P3H3	Q8IVL6	736 aa		11.06	□□□□□ -0.64
RAPGEF6-208	ENST00000509018	ZNF326	Q5BKZ1	582 aa	Known RBP	11.04	□□□□□ -0.64
RAPGEF6-208	ENST00000509018	SLC24A1	O60721	1099 aa		11.03	□□□□□ -0.64
RAPGEF6-208	ENST00000509018	BCAN	Q96GW7	911 aa		10.99	□□□□□ -0.65
RAPGEF6-208	ENST00000509018	NEUROD1	Q13562	356 aa		10.97	□□□□□ -0.65
RAPGEF6-208	ENST00000509018	FAM50A	Q14320	339 aa	Known RBP	10.97	□□□□□ -0.65
RAPGEF6-208	ENST00000509018	PELP1	Q8IZL8	1130 aa	Known RBP	10.97	□□□□□ -0.65
RAPGEF6-208	ENST00000509018	TRIM52	Q96A61	297 aa		10.96	□□□□□ -0.66
RAPGEF6-208	ENST00000509018	ABCC9	O60706	1549 aa		10.91	□□□□□ -0.66
RAPGEF6-208	ENST00000509018	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.86	□□□□□ -0.67
RAPGEF6-208	ENST00000509018	SENP3-EIF4A1	A0A087X0R7	540 aa		10.83	□□□□□ -0.68
RAPGEF6-208	ENST00000509018	NEFL	P07196	543 aa		10.8	□□□□□ -0.68
RAPGEF6-208	ENST00000509018		A0A0G2JS52	829 aa		10.8	□□□□□ -0.68
RAPGEF6-208	ENST00000509018	CHGA	P10645	457 aa	Known RBP	10.79	□□□□□ -0.68
RAPGEF6-208	ENST00000509018	ZBTB7C	A1YPR0	619 aa		10.79	□□□□□ -0.68
RAPGEF6-208	ENST00000509018	CENPB	P07199	599 aa	Predicted RBP	10.76	□□□□□ -0.69
RAPGEF6-208	ENST00000509018	SCAF1	Q9H7N4	1312 aa	Known RBP	10.76	□□□□□ -0.69
RAPGEF6-208	ENST00000509018	CLSPN	Q9HAW4	1339 aa		10.67	□□□□□ -0.7
RAPGEF6-208	ENST00000509018	SALL2	Q9Y467	1007 aa	Predicted RBP	10.66	□□□□□ -0.7
RAPGEF6-208	ENST00000509018	HRC	P23327	699 aa		10.62	□□□□□ -0.71
RAPGEF6-208	ENST00000509018	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.62	□□□□□ -0.71	1e-6	■■□□□ 13.7
RAPGEF6-208	ENST00000509018	DAXX	Q9UER7	740 aa	Predicted RBP	10.59	□□□□□ -0.71
RAPGEF6-208	ENST00000509018	CHIC2	Q9UKJ5	165 aa		10.59	□□□□□ -0.71
RAPGEF6-208	ENST00000509018	TRIM26	Q12899	539 aa	Predicted RBP	10.58	□□□□□ -0.72
RAPGEF6-208	ENST00000509018	STAG3	Q9UJ98	1225 aa		10.56	□□□□□ -0.72
RAPGEF6-208	ENST00000509018	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.55	□□□□□ -0.72
RAPGEF6-208	ENST00000509018	KCNH8	Q96L42	1107 aa		10.51	□□□□□ -0.73
RAPGEF6-208	ENST00000509018	ZEB1	P37275	1124 aa	Predicted RBP	10.5	□□□□□ -0.73
RAPGEF6-208	ENST00000509018	C14orf37	Q86TY3	774 aa		10.5	□□□□□ -0.73
RAPGEF6-208	ENST00000509018	ESF1	Q9H501	851 aa	Known RBP	10.49	□□□□□ -0.73
RAPGEF6-208	ENST00000509018	NPM2	Q86SE8	214 aa	Known RBP	10.48	□□□□□ -0.73
RAPGEF6-208	ENST00000509018	KDM2A	Q9Y2K7	1162 aa		10.46	□□□□□ -0.73
RAPGEF6-208	ENST00000509018	CANX	P27824	592 aa	Known RBP	10.46	□□□□□ -0.73
RAPGEF6-208	ENST00000509018	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.43	□□□□□ -0.74
RAPGEF6-208	ENST00000509018	TRH	P20396	242 aa	Predicted RBP	10.43	□□□□□ -0.74
RAPGEF6-208	ENST00000509018	TAOK2	Q9UL54	1235 aa		10.43	□□□□□ -0.74
RAPGEF6-208	ENST00000509018	ARX	Q96QS3	562 aa		10.41	□□□□□ -0.74
RAPGEF6-208	ENST00000509018	TULP1	O00294	542 aa	Predicted RBP	10.4	□□□□□ -0.74
RAPGEF6-208	ENST00000509018	MLEC	Q14165	292 aa		10.39	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	TPRN	Q4KMQ1	711 aa		10.39	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	IRX6	P78412	446 aa	Predicted RBP	10.39	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.39	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.38	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	DIEXF	Q68CQ4	756 aa	Known RBP	10.38	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	LMOD2	Q6P5Q4	547 aa		10.35	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	NPM1	P06748	294 aa	Known RBP eCLIP	10.34	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	FAM9B	Q8IZU0	186 aa		10.34	□□□□□ -0.75
RAPGEF6-208	ENST00000509018	SOX12	O15370	315 aa		10.32	□□□□□ -0.76
RAPGEF6-208	ENST00000509018	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.31	□□□□□ -0.76
RAPGEF6-208	ENST00000509018	RGL3	Q3MIN7	710 aa		10.29	□□□□□ -0.76
RAPGEF6-208	ENST00000509018	HAP1	P54257	671 aa	Predicted RBP	10.28	□□□□□ -0.76
RAPGEF6-208	ENST00000509018	GTF3C3	Q9Y5Q9	886 aa		10.27	□□□□□ -0.76
RAPGEF6-208	ENST00000509018	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.27	□□□□□ -0.76
RAPGEF6-208	ENST00000509018	RRP7BP	Q9NSQ0	103 aa		10.27	□□□□□ -0.77
RAPGEF6-208	ENST00000509018	ANP32C	O43423	234 aa		10.26	□□□□□ -0.77
RAPGEF6-208	ENST00000509018	PPM1G	O15355	546 aa	Predicted RBP	10.25	□□□□□ -0.77
RAPGEF6-208	ENST00000509018	DDX10	Q13206	875 aa	Known RBP	10.24	□□□□□ -0.77
RAPGEF6-208	ENST00000509018	TNNT2	P45379	298 aa	Predicted RBP	10.23	□□□□□ -0.77
RAPGEF6-208	ENST00000509018	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.23	□□□□□ -0.77
RAPGEF6-208	ENST00000509018	PPP1R15A	O75807	674 aa	Predicted RBP	10.21	□□□□□ -0.77
RAPGEF6-208	ENST00000509018	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.21	□□□□□ -0.77
RAPGEF6-208	ENST00000509018	NEFM	P07197	916 aa		10.19	□□□□□ -0.78
RAPGEF6-208	ENST00000509018	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.19	□□□□□ -0.78
RAPGEF6-208	ENST00000509018	TMC1	Q8TDI8	760 aa		10.19	□□□□□ -0.78
RAPGEF6-208	ENST00000509018	CSRNP3	Q8WYN3	585 aa		10.18	□□□□□ -0.78
RAPGEF6-208	ENST00000509018	NEUROD2	Q15784	382 aa		10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms