RNA–Protein interactions for RNA: ENST00000480484.5

COMMD4-203, Transcript of COMM domain containing 4, humanhuman

TSL 1 (best)

Gene COMMD4, Length 3,225 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-203ENST00000480484 NPM2Q86SE8 214 aaKnown RBP15.15■□□□□ 0.02
COMMD4-203ENST00000480484 KDM2AQ9Y2K7 1162 aa15.13■□□□□ 0.01
COMMD4-203ENST00000480484 MRC2Q9UBG0 1479 aa15.13■□□□□ 0.01
COMMD4-203ENST00000480484 TARBP1Q13395 1621 aaKnown RBP15.13■□□□□ 0.01
COMMD4-203ENST00000480484 WRNQ14191 1432 aaPredicted RBP eCLIP15.12■□□□□ 0.01
COMMD4-203ENST00000480484 PDS5BQ9NTI5 1447 aa15.11■□□□□ 0.01
COMMD4-203ENST00000480484 SYNJ1O43426 1573 aa15.1■□□□□ 0.01
COMMD4-203ENST00000480484 CEP162Q5TB80 1403 aa15.09■□□□□ 0.01
COMMD4-203ENST00000480484 FBLN2P98095 1184 aa15.07■□□□□ 0
COMMD4-203ENST00000480484 TOP2BQ02880 1626 aa15.07■□□□□ 0
COMMD4-203ENST00000480484 C14orf37Q86TY3 774 aa15.07■□□□□ 0
COMMD4-203ENST00000480484 HNRNPUL2Q1KMD3 747 aaKnown RBP15.07■□□□□ 0
COMMD4-203ENST00000480484 UBTFP17480 764 aaKnown RBP15.06■□□□□ 0
COMMD4-203ENST00000480484 ZNF316A6NFI3 1004 aaPredicted RBP15.06■□□□□ 0
COMMD4-203ENST00000480484 NPM3O75607 178 aaKnown RBP15.05■□□□□ 0
COMMD4-203ENST00000480484 MIER1Q8N108 512 aa15.05■□□□□ 0
COMMD4-203ENST00000480484 CEP164Q9UPV0 1460 aa15.02■□□□□ -0
COMMD4-203ENST00000480484 TNIKQ9UKE5 1360 aa15.02□□□□□ -0.01
COMMD4-203ENST00000480484 ABCA5Q8WWZ7 1642 aa15.01□□□□□ -0.01
COMMD4-203ENST00000480484 FANCD2Q9BXW9 1451 aa15.01□□□□□ -0.01
COMMD4-203ENST00000480484 EEA1Q15075 1411 aa15□□□□□ -0.01
COMMD4-203ENST00000480484 URB2Q14146 1524 aaKnown RBP14.99□□□□□ -0.01
COMMD4-203ENST00000480484 NESP48681 1621 aa14.99□□□□□ -0.01
COMMD4-203ENST00000480484 GOLGA3Q08378 1498 aa14.96□□□□□ -0.01
COMMD4-203ENST00000480484 VSIG10Q8N0Z9 540 aa14.96□□□□□ -0.01
COMMD4-203ENST00000480484 PBRM1Q86U86 1689 aa14.96□□□□□ -0.01
COMMD4-203ENST00000480484 PLEKHG5O94827 1062 aa14.96□□□□□ -0.02
COMMD4-203ENST00000480484 TOPBP1Q92547 1522 aa14.93□□□□□ -0.02
COMMD4-203ENST00000480484 CUX1P39880 1505 aa14.89□□□□□ -0.03
COMMD4-203ENST00000480484 IFT140Q96RY7 1462 aa14.88□□□□□ -0.03
COMMD4-203ENST00000480484 RAPGEF2Q9Y4G8 1499 aa14.88□□□□□ -0.03
COMMD4-203ENST00000480484 KIF21BO75037 1637 aa14.86□□□□□ -0.03
COMMD4-203ENST00000480484 ABCA10Q8WWZ4 1543 aa14.84□□□□□ -0.03
COMMD4-203ENST00000480484 EIF4G3O43432 1585 aaKnown RBP14.84□□□□□ -0.03
COMMD4-203ENST00000480484 CLIP1P30622 1438 aa14.82□□□□□ -0.04
COMMD4-203ENST00000480484 CUL7Q14999 1698 aa14.79□□□□□ -0.04
COMMD4-203ENST00000480484 ERICH3Q5RHP9 1530 aa14.78□□□□□ -0.04
COMMD4-203ENST00000480484 SHROOM2Q13796 1616 aa14.77□□□□□ -0.05
COMMD4-203ENST00000480484 KCNH8Q96L42 1107 aa14.75□□□□□ -0.05
COMMD4-203ENST00000480484 SUPT16HQ9Y5B9 1047 aaKnown RBP14.75□□□□□ -0.05
COMMD4-203ENST00000480484 POLA1P09884 1462 aaPredicted RBP14.74□□□□□ -0.05
COMMD4-203ENST00000480484 ERCC6Q03468 1493 aa14.73□□□□□ -0.05
COMMD4-203ENST00000480484 VPS8Q8N3P4 1428 aa14.72□□□□□ -0.05
COMMD4-203ENST00000480484 ADAMTS12P58397 1594 aa14.71□□□□□ -0.05
COMMD4-203ENST00000480484 ANP32EQ9BTT0 268 aa14.71□□□□□ -0.06
COMMD4-203ENST00000480484 BCL11AQ9H165 835 aa14.7□□□□□ -0.06
COMMD4-203ENST00000480484 PPP6R1Q9UPN7 881 aa14.7□□□□□ -0.06
COMMD4-203ENST00000480484 CLASP1Q7Z460 1538 aa14.7□□□□□ -0.06
COMMD4-203ENST00000480484 CHD1O14646 1710 aa14.69□□□□□ -0.06
COMMD4-203ENST00000480484 PRXQ9BXM0 1461 aa14.68□□□□□ -0.06
COMMD4-203ENST00000480484 TSHZ2Q9NRE2 1034 aa14.68□□□□□ -0.06
COMMD4-203ENST00000480484 MAGI1Q96QZ7 1491 aaPredicted RBP14.67□□□□□ -0.06
COMMD4-203ENST00000480484 FBXO3Q9UK99 471 aa14.65□□□□□ -0.06
COMMD4-203ENST00000480484 ITGAEP38570 1179 aa14.64□□□□□ -0.07
COMMD4-203ENST00000480484 FGD5Q6ZNL6 1462 aa14.64□□□□□ -0.07
COMMD4-203ENST00000480484 KIF27Q86VH2 1401 aa14.63□□□□□ -0.07
COMMD4-203ENST00000480484 ARAP1Q96P48 1450 aa14.62□□□□□ -0.07
COMMD4-203ENST00000480484 KANK4Q5T7N3 995 aaPredicted RBP14.6□□□□□ -0.07
COMMD4-203ENST00000480484 CLSPNQ9HAW4 1339 aa14.6□□□□□ -0.07
COMMD4-203ENST00000480484 CTTNBP2Q8WZ74 1663 aa14.57□□□□□ -0.08
COMMD4-203ENST00000480484 PPP4R3CPQ6ZMV5 832 aa14.56□□□□□ -0.08
COMMD4-203ENST00000480484 HIRIP3Q9BW71 556 aaPredicted RBP14.56□□□□□ -0.08
COMMD4-203ENST00000480484 IGF1RP08069 1367 aa14.52□□□□□ -0.08
COMMD4-203ENST00000480484 GRIN2BQ13224 1484 aa14.51□□□□□ -0.09
COMMD4-203ENST00000480484 ARHGAP35Q9NRY4 1499 aa14.51□□□□□ -0.09
COMMD4-203ENST00000480484 DHX57Q6P158 1386 aaKnown RBP14.48□□□□□ -0.09
COMMD4-203ENST00000480484 NUP160Q12769 1436 aa14.47□□□□□ -0.09
COMMD4-203ENST00000480484 SYNJ2O15056 1496 aa14.47□□□□□ -0.09
COMMD4-203ENST00000480484 FOXD4L1Q9NU39 408 aa14.46□□□□□ -0.09
COMMD4-203ENST00000480484 RAD54L2Q9Y4B4 1467 aa14.46□□□□□ -0.1
COMMD4-203ENST00000480484 CARMIL1Q5VZK9 1371 aa14.45□□□□□ -0.1
COMMD4-203ENST00000480484 FOXD1Q16676 465 aa14.44□□□□□ -0.1
COMMD4-203ENST00000480484 ZNF608Q9ULD9 1512 aaPredicted RBP14.42□□□□□ -0.1
COMMD4-203ENST00000480484 P3H3Q8IVL6 736 aa14.41□□□□□ -0.1
COMMD4-203ENST00000480484 CEP170Q5SW79 1584 aa14.41□□□□□ -0.1
COMMD4-203ENST00000480484 GAPVD1Q14C86 1478 aa14.4□□□□□ -0.1
COMMD4-203ENST00000480484 CFAP44Q96MT7 982 aa14.4□□□□□ -0.1
COMMD4-203ENST00000480484 PAXIP1Q6ZW49 1069 aaPredicted RBP14.39□□□□□ -0.11
COMMD4-203ENST00000480484 SIN3AQ96ST3 1273 aa14.39□□□□□ -0.11
COMMD4-203ENST00000480484 FHAD1B1AJZ9 1412 aa14.37□□□□□ -0.11
COMMD4-203ENST00000480484 DDX10Q13206 875 aaKnown RBP14.36□□□□□ -0.11
COMMD4-203ENST00000480484 SAMD9Q5K651 1589 aa14.36□□□□□ -0.11
COMMD4-203ENST00000480484 RBM19Q9Y4C8 960 aaKnown RBP14.36□□□□□ -0.11
COMMD4-203ENST00000480484 TRIM52Q96A61 297 aa14.35□□□□□ -0.11
COMMD4-203ENST00000480484 GRIN2AQ12879 1464 aa14.35□□□□□ -0.11
COMMD4-203ENST00000480484 RRBP1Q9P2E9 1410 aaKnown RBP14.34□□□□□ -0.11
COMMD4-203ENST00000480484 UGGT2Q9NYU1 1516 aa14.33□□□□□ -0.12
COMMD4-203ENST00000480484 ATP1B4Q9UN42 357 aaPredicted RBP14.33□□□□□ -0.12
COMMD4-203ENST00000480484 NEFLP07196 543 aa14.32□□□□□ -0.12
COMMD4-203ENST00000480484 SNAPC4Q5SXM2 1469 aa14.32□□□□□ -0.12
COMMD4-203ENST00000480484 CCNB3Q8WWL7 1395 aa14.32□□□□□ -0.12
COMMD4-203ENST00000480484 NBR1Q14596 966 aa14.31□□□□□ -0.12
COMMD4-203ENST00000480484 TIAM1Q13009 1591 aa14.3□□□□□ -0.12
COMMD4-203ENST00000480484 FHOD3Q2V2M9 1422 aa14.3□□□□□ -0.12
COMMD4-203ENST00000480484 RIMBP3CA6NJZ7 1639 aa14.3□□□□□ -0.12
COMMD4-203ENST00000480484 RIMBP3BA6NNM3 1639 aa14.3□□□□□ -0.12
COMMD4-203ENST00000480484 RIMBP3Q9UFD9 1639 aa14.3□□□□□ -0.12
COMMD4-203ENST00000480484 IGSF3O75054 1194 aa14.28□□□□□ -0.12
COMMD4-203ENST00000480484 TRHP20396 242 aaPredicted RBP14.28□□□□□ -0.12
COMMD4-203ENST00000480484 TDRD9Q8NDG6 1382 aaKnown RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms